RNA id: TCONS_00064265


Basic Information

Item Value
RNA id TCONS_00064265
length 598
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_033072
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40841156 ~ 40842768 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACACCAGCAGCACAAACCAAAAACAGTTTTCATTACTGAGCTGCTGGAACTAATTGAAGATGTCATCTTCAAACAACAATGTGTCTATCCTACAGCAACAACAGTGACTGAGATTAAATGGGAGGAGGAACCGTGTGACTCACACTTTGGCCAAAGGAATTATGGCCCATTTGGGATTGGACTCTGGGAAGGGACGAGTTTGCGTGAggatataaagcatataaacGCACACGGGACGAGTATAAAACAGAAACTTCAGCAAGACTGCAGGACCATGTCTCAACTGGGCGAACAAGAGGAAGTGAAGAGGCCTGAGGTGAAAACGGAGGATTTGATTGGAGCCAGAGATAAACTTGCATCTGGAACTGAGGTGAAGAGCAAGACTTTTGAGGTGATGCAGGAATGTGAACGAGCTGGGAAAGCCGCTCCATCCGTCTTCAGCAACGTTCGCTCAGGATCAGAGACTGCCTTTAACAAACCCACCAAGAGGAAGTAACACTGTAGGACCATTCTGTTTTACTGGATCATACTGCTGAAACACGTGGTACAAATTAAGACTgtaggaaaataaaaaaataaaaaagtctaaaaaaaa

Function

GO:

id name namespace
GO:0002062 chondrocyte differentiation biological_process
GO:0044782 cilium organization biological_process
GO:0042246 tissue regeneration biological_process
GO:0060271 cilium assembly biological_process
GO:0035988 chondrocyte proliferation biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-111129-3 Acts upstream of or within cilium assembly. Located in nucleus. Is expressed in several structures, including Kupffer's vesicle; head; otic vesicle; pectoral fin bud; and segmental plate. Orthologous to human MUSTN1 (musculoskeletal, embryonic nuclear protein 1).

Ensembl:

ensembl_id ENSDART00000076160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065212 lncRNA downstream 179832 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 182056 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 211995 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 212034 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 267924 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065213 lncRNA upstream 13371 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 13371 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 17528 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 120918 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 183460 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064264 mRNA downstream 8911 40822587 ~ 40832245 (-) True XLOC_033071
TCONS_00064256 mRNA downstream 62862 40743367 ~ 40778294 (-) False XLOC_033067
TCONS_00064262 mRNA downstream 69343 40769517 ~ 40771813 (-) True XLOC_033069
TCONS_00064259 mRNA downstream 72430 40761626 ~ 40768726 (-) False XLOC_033067
TCONS_00064260 mRNA downstream 72502 40762429 ~ 40768654 (-) False XLOC_033067
TCONS_00064266 mRNA upstream 1018 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA upstream 1191 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064268 mRNA upstream 34626 40877394 ~ 40884453 (-) False XLOC_033075
TCONS_00064269 mRNA upstream 35122 40877890 ~ 40882880 (-) False XLOC_033075
TCONS_00064270 mRNA upstream 35123 40877891 ~ 40885496 (-) False XLOC_033075
TCONS_00064263 other downstream 21390 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 73485 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 173693 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 184868 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 185071 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064277 other upstream 103589 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 237529 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1566689 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1567456 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1572598 42415366 ~ 42415879 (-) True XLOC_033096

Expression Profile

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