RNA id: TCONS_00064271


Basic Information

Item Value
RNA id TCONS_00064271
length 934
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_033075
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40877394 ~ 40922971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGATGACCGCTGCTGCTGCTACTGTACTAATGGTTACGAAATAGAAGACTTGGTTTCGAGGATATTATCAAAACAGTTTGCTTTTATCTGCTGCTGAGTGAACAGGTCTGTAGATGCTGTTGTCATGCAGATACCTGCCTCCTCCTGTGGCAGTGGGAAGATGTGCTTCTACAATACAAGCTGGTGTACAACAGTTTGTTCCTGCAAGTGGCTCCTTTGACTCCAGTGCTTTGGAACAGCTCCAGGCCTTTATATCACAGGCTTCTCGTCTGTTTGTAATAAGCGGTGCCGGACTCTCCACTGAATCGGGTATTCCAGACTACAGGTCAGAGGGAGTGGGACTGTACGCACGGACTAACAGACGGCCTATGCAGCACTCTGAGTTTGTGCGCAGTGAGAAATCCAGGCAGAGGTACTGGGCGCGAAATTATGTGGGGTGGCCACAGTTTTCTTCGCACCAGCCTAACTCAGCACATCTCGCATTACGGGACTGGGAAGAAAAGGGAAAACTGCACTGGCTTGTGACTCAGAATGTAGATGCCTTGCATTTAAAGGCTGGACAACAGAGACTGACTGAACTGCATGGATCTACCCATAGGGttgtgtgtttggactgtggtgaacTGACTCTTCGTGCTGAGCTTCAGAAGCGTTTCACAGCCTTGAACCCCGGCTGGGAAGCGACTGCATGTGCGGTGGCTCCAGATGGAGACGTGTTTCTGGAGGAGGAGCAGGTGCTGAACTTCAGAGTGCCTGCATGCAACGCTTGTGGTGGCGTTCTCAAACCCGAGGTCACCTTCTTTGGGGATGTGGTCAAGCGGAATACAGTTCACTTTGTGCATAACAAGCTGGCCGAGTCTGATGCTGTGCTTGTTGCTGGATCTTCTCTTCAGGTGTTTTCAGGGTACCGATTTCTCCTCGCTGCTAGTGAAA

Function

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0034979 NAD-dependent protein deacetylase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041010-65 Predicted to enable several functions, including NAD+ binding activity; acyltransferase activity, transferring groups other than amino-acyl groups; and zinc ion binding activity. Predicted to be involved in protein ADP-ribosylation and protein deacetylation. Predicted to be located in mitochondrial matrix. Is expressed in liver and retina. Orthologous to human SIRT4 (sirtuin 4).

Ensembl:

ensembl_id ENSDART00000154100

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065214 lncRNA downstream 13926 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065213 lncRNA downstream 14117 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065215 lncRNA downstream 14283 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065212 lncRNA downstream 216680 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 218904 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065216 lncRNA upstream 79221 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 141763 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064291 lncRNA upstream 202143 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00065217 lncRNA upstream 202164 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00065218 lncRNA upstream 567205 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064266 mRNA downstream 23546 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA downstream 26505 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064265 mRNA downstream 35236 40841156 ~ 40842768 (-) True XLOC_033072
TCONS_00064264 mRNA downstream 45759 40822587 ~ 40832245 (-) True XLOC_033071
TCONS_00064262 mRNA downstream 106191 40769517 ~ 40771813 (-) True XLOC_033069
TCONS_00064272 mRNA upstream 150 40884615 ~ 40899618 (-) False XLOC_033075
TCONS_00064273 mRNA upstream 153 40884618 ~ 40899618 (-) False XLOC_033075
TCONS_00064275 mRNA upstream 14412 40898877 ~ 40921412 (-) False XLOC_033075
TCONS_00064274 mRNA upstream 14412 40898877 ~ 40921412 (-) False XLOC_033075
TCONS_00064276 mRNA upstream 15588 40900053 ~ 40922971 (-) True XLOC_033075
TCONS_00064263 other downstream 58238 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 110333 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 210541 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 221716 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 221919 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064277 other upstream 61892 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 195832 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1524992 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1525759 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1530901 42415366 ~ 42415879 (-) True XLOC_033096

Expression Profile

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