RNA id: TCONS_00064272


Basic Information

Item Value
RNA id TCONS_00064272
length 2415
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_033075
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40877394 ~ 40922971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGATTTCTGACGGACTATGATGAAGCTCGTGAGTGTTATTGTTGTGCTCTTGCTGCTGTTGTGCTCCATCACCAGCTGGGGTAAGAAGATGCGCTGGTGTGCAGTATCAGAGGCAGAGCAGAAGAAGTGTGCAGAACTGGCCAAAGCTCTTGTCGCTGTCCTTCCACCTGCAGCAGTCACTGCGTTCGCTCGTCTGTCATGTGTGAAAGCTTACAGCACCGCAGACTGCATTAATAAGATAAGGGATAATAAAGCTGACCTGGTGACTCTGGACGCCGGAGAGGTTTATTCTGCTGTCAAACAGTTTGGGCTCACAGTAGTTGCAAAGGAAATCTACAGAGATGGTGGCTGTATTCTTGCAGTTGCTGTGGTCAGGAACAACAGTTCTTTAGACATGCGCTCTCTGCAGGGCAGTAGGAGCTGTCACAGTGGAGCTCGCTGGACTGCAGGCTGGAGTCTGCCTTTGGGACACTTACTGTCTCGAAACCTTCTGCCCTGGGCTGAGGATGAGCCCATCAGTCAGGCGGTCAGTGCTTTCTTCAATGCTAGCTGTGTTCCTGGAGCAACTACAATGGCAGCAAACCTTTGTTTCTTATGCAAAGGCCAAAGGTCTTACATTCGTCAGAAGAACTTCCACTGTGAGACGTCTCACAGCGAACCATTCTATCACAACCAAGGAGCACTCAgATGTTTGCAGTCAGGAGCTGGAGATATTGCTTTTGTGGATCACACAGCTCTGGACAGCATTGATGAGAGGGAGAAGGATGAGCTGCGCCTGCTGTGTACAGATGGGTCTCTGGCTCCGCTCAGCAGCTTTAGGACGTGTAATCTTGGACGAGGTCCTGGAGGCGGTGTGGTCACACGGATGAACATAAGGAAAATTGCTCGAAAGTTCTTGGTTGCTGCCCAGATGTCTTTTGGTTGGAGGGGAAGGGAGCGTCGGCGTTTCCAGCTGTTTGAATCTGCATCCTTTGGTGGGAGTGACCTTCTCTTCAGAGATGTGACGGAGAAATTATCTGTTCTGATGGAGGATATGGATATGAGCCAGGTTCTGGGACTCGACTATGTGGCCTTGCTCAAGGGTCTTGGACATGAAGGTAGTTCGCTGGAGGACAGTGTGGTGAGGTGGTGCTGTATAAGTCACGCCGAACAGAAGAAATGTGAGCAGTGGGCTATTAGTATAAAATCAGACCCTCTGGTGTGTGTAAAAGCCTCATCTATGAGTGACTGCATTGAGAAGATCAAGAGGGATGAAGTGGATGCCGTGTCTCTGGACGCCACTCATGCTTTTATAGCTGGAAAATGCGGCCTTGTCCCTGTTGTGACTGAATATTATGGAGAGAAATGTGAGACTTCTGCAGGAGGTGGAGGCCATTTTGAAAGTAACGAATTGCCGCCAGTGTACGGTGTGGCAGTTGTGCGTCGATCAAGCAAGAGTTTATTTTTTGGAAGTCTGGCCGACAGACGCTCCTGCCACGGTCACATGTACAGTCCTGCAGGCTGGGTTTTACCTGTAAGACACACACTTAGCACAGAACACAACAACAGCGCTCCCTGTGAGCCCAATAAAGTGTACTCTGAGGTGTTTTGGAAAGGCTGTTTGCCTGGGGGTCAGGGTAATCTGTGTAAGGTGTGTATGGGTGGAACTGAGGAAGCTGCCACGAAACGTTGTGCTGACAACCATAATGAGCGCTACTACGGCAACATGGGTGCATTAAGGTGCCTGGTTGGAGACCCAACTGGGAAAAGTTTTGGAGATGTGGCCTTTATGGAGCACCACAATCTAGAAAGCAACATTGAACGTCTGAACACCAGTGGCTGGGCAGAAGGTTGGGTCACTTGGGACTTTGAGTTACTCTGCAGCGATGGCAGTCGGGCTCCTTTGTCGCAATGGAAGAGCTGTAATTTAGGCGCAGTCCCTCCAAATATTGTTATGACACGTCCTGTTCTTACCGCTCGCATTTATGACCTCTTAATGAAGTCACAGGATACCACAGAGGCTCGCCCTGATTCTGGGTTTCATCTGTTTGAGTCTCAGCAGTACGGAGAGAGTGACCTGCTTTTTAAAGATGTTACAAAGTGTCTAGTTCACACCAGTCACATGGACTACCGGACCATACTGGGAAATGAGTTCTGTTCACAGGCGGAGAGCATCTTCAACTGCACACACTCCAATATCCTACAGTTCTGCAATCAAGATGTATGCAGCATATTCTAATCAGTCTAGATgaaatagcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatatatgactgttaAAAAGCAGCATGGgtcatgttttgtattttatgtatcGCTCATgacatacaataaaatataatttgattata

Function

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0034979 NAD-dependent protein deacetylase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080204-110 Predicted to enable metal ion binding activity. Predicted to be involved in iron ion transport. Predicted to act upstream of or within ion transport and iron ion homeostasis. Predicted to be located in extracellular region. Predicted to be active in endosome; extracellular space; and plasma membrane.

Ensembl:

ensembl_id ENSDART00000153949

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065214 lncRNA downstream 20537 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065213 lncRNA downstream 20728 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065215 lncRNA downstream 20894 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065212 lncRNA downstream 223291 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 225515 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065216 lncRNA upstream 64068 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 126610 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064291 lncRNA upstream 186990 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00065217 lncRNA upstream 187011 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00065218 lncRNA upstream 552052 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064271 mRNA downstream 150 40878004 ~ 40884465 (-) False XLOC_033075
TCONS_00064268 mRNA downstream 162 40877394 ~ 40884453 (-) False XLOC_033075
TCONS_00064269 mRNA downstream 1735 40877890 ~ 40882880 (-) False XLOC_033075
TCONS_00064266 mRNA downstream 30157 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA downstream 33116 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064276 mRNA upstream 435 40900053 ~ 40922971 (-) True XLOC_033075
TCONS_00064278 mRNA upstream 76037 40975655 ~ 40990473 (-) False XLOC_033078
TCONS_00064279 mRNA upstream 78350 40977968 ~ 40992683 (-) True XLOC_033078
TCONS_00064280 mRNA upstream 115173 41014791 ~ 41021880 (-) False XLOC_033079
TCONS_00064281 mRNA upstream 118947 41018565 ~ 41021571 (-) True XLOC_033079
TCONS_00064263 other downstream 64849 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 116944 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 217152 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 228327 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 228530 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064277 other upstream 46739 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 180679 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1509839 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1510606 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1515748 42415366 ~ 42415879 (-) True XLOC_033096

Expression Profile

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