RNA id: TCONS_00065216


Basic Information

Item Value
RNA id TCONS_00065216
length 3041
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_033077
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40963686 ~ 40968341 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAGTGATGACCGCCAGGAAGAAAATTCtcaaatacagttttattttatacCCATCTCTGTGCCAAATAGACAGAGACACGAAAAACAGTGTACAAAAACAAACATCAATAGAAAAGTATGCTTATATCCAAATGTCCAAAAATTGATCAACGCCGTGACATAAATTGCAGAGAAACAACATTTtgtcagaaaacaaacaaacaaaaaaaggtagAATACCAAACATGTACAAATGTACACTTCTCTATGTGCATGTCTTTATACAAAAGTGTCAATGCAACTCTGTTTGTATATGGGTTCTTTTTAAAGATAGGTCCtttaaatgacagatttttccTACCCATCGCTGTTCACAATCAGTACTGGGAAGGCACTTTGCAACATACAAGTAATTGAATATATAAGCTAGAAAAAAAAACGTTTCCAGTGATGTAATAAGCCAGAACACCTTACTAGACAAACAtagaataacattaataataataataataggaaaaaaaaatcaaaccattTTTAATTGGTAAATAAATAAGGGCTGCAAATATTCAGATCACACTATGATGCCAGGCAGATGATGATTGTTACTATTAAAAGaataatatttcaattaaaacatgttaaattagCAATGATTAGTCAAATAAGTGAGCATACTCGGCATAGTCCACTGCTCAGATCAGCCTGCTTTAGATTTTACATGTTAACAGAAAGGAAATTCACTGACAGCTTCCATCATGAATGACAAACTGCCCTTCCAAATACATATAAGTTGATGGGAGACTATACAAATAACCTGCAGGGTAAAGTAAAGGGAAATATAACCAGCATTAACACTGCATTCAGAGGAACAGGCTaacaccaaacacacactcaattaCTTGCATAATAATAATCAAGACACAACAAAAGTGTGGATGTGTCATTATCCACTTAAAACAAgtatttaaagcataaaaacgTCCATTCGTTCATTCAAAGCCCAGAAAAATATCTATTTACAAGGATCCCGTTCACAAAAACTAACATAATTggccatacatatatacatatttgctttatatatatatatatatatgaatgttatACGTCATGTATAGTGACAAGAATTTAAGTTAAGCAGGAATGTATTGAACCACTTAGAAAAACTCTGGTATatttaagaaaagaaaagattACAAAGCCCTCTGTTTATATTACATTCTAGAGATAAAGGACATCAGAGAGATCGCAGCATACACTCGTGTTACACAAACACACGTCATCACACTCACGCTCTCCTCCTGTCGGCTGcatgatttaaaaaggaaaaaaaaagcatgttgcAACAACTCAATATATAtacctttttgtaaaggagactTGGACACTGGTAtcaataagttaataaaatatattctttgcTTCTTGCTATATCTTACAGTGAAACCTGAATTTGGTCCCTGTTGGACGTTAAAAACAGACACACATCTCGTGACCAAAAGCAATCTGTTTCAGTACTATCCAAGacaaacaaagcacaaaataTTACTGAGATCACAGCCATCGTTTGGCCTTAAGTTTTGAAGGATTTCATTTAAATAACTGACGAAAGTATTTCATACTAAAATGTTGAAGTAGGTGATGTAGGTTTTGTGTCATATATGGAAGCTTGTTTTTTTCCAGAGtaacaaaaataagaaaatgatTTCAATTTTTTTCCTCACAATTCATACTTTTTTCTTGCATGTTTAGATCTTAAAATTAATCATTTCTTCTCAAACTTCAACCTCATAACGGCCAAGTTGGAAAATTTTCCTTCCCCTTAAACTTGATATCTTGAATATTTGGACTTTTCAACATAACACGtcttttaatctaaaaaaaaacaaacaatataattaaTTCATACCTTTTTCTGCAAGAACAGCATGTTTAGATCTTAAACTCAGAATTTTCAACAGAAATTTGGACTTTTCAACATTTAACACATcctttaatcataaaaaaaactacagaattattttttttttccagcaagaACTGCAAGTTTAgatcttaaaatgtataatttcttcTGAAAATTTGTAGTGTAAACCTCACAATAGCCAAGTTGAAAAAAACTTTGCTTTCCCCTCACAACTTTATATATTGGCTTTTTGGACTTTTCAACTTAACACAactttttatcttaaaaaaaaaaaaacaataaaattaattaatcctTTGAACTGCAAATTTAGATCTTGAAATTAATCATTTCTGCTAAAAAATTCTGAATTTTAACCTCACAACAGCCAAGATGGAAAACTTTCCTTTCCCCTCATAAATTTATATCTTGAATTTTTGgactttaaaatttttaacatatctttaataaaaaataaataaaaaataaaataaaaacaaatataattataacAGTACAACTAAGAAAACTTTTTTCTGCAAGAACTTCAAGCTTAGatcttaaaattattaatttcttcTGAAAATTCTGAGTTTAAACCTCACCATAGTCAAGTTGGAAAACATGCAGTTGCAAGAATGAATTAATTCTTTACAAGATTAAAAGGTGTGTTCATAGTTATAAAGTCAAGGTATAAAGTTCTGAGGAAAAAGAAAGTTTTACAACTTGGCTATTGTGAGGAGGCAAAGGCCGACTGGACGATCTGAAAGCCAAAGGATTCAAGAAGTGACATATTCTGTTGGGGGGAAAAGGGTGAGGCGAGGTCTCCAAGACTGGAGGCAGCCGCAGCACGTTTCTTATGGACACGGTGATGGTGCTTGTTGAGGTAAGACTTTGTGCGGAAAGCCTGACCGCATTCGCCACAGGCGAACTTCTTTTCCTGGTCTGTTGTTGGGATGTTTTTGGAGCCCTCTGGTGAGGTCACTGCGTCATCAGGTTGGCCGTTGAAGATGAAGGATGTCACCTCCATTTCTTCTCCCTCAACTTTATGTTCAGCCTTGAGATCCATTCCGTTGGAAAGGTCACCGAAAACTGCATCTGAACCGTCAGAATCCTGATGAGGACATTTCCCAGCATTCTCCTGCCCGTCTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065214 lncRNA downstream 99608 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065213 lncRNA downstream 99799 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065215 lncRNA downstream 99965 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065212 lncRNA downstream 302362 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 304586 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00064283 lncRNA upstream 57887 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064291 lncRNA upstream 118267 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00065217 lncRNA upstream 118288 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00065218 lncRNA upstream 483329 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064308 lncRNA upstream 1406479 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064276 mRNA downstream 40715 40900053 ~ 40922971 (-) True XLOC_033075
TCONS_00064275 mRNA downstream 42274 40898877 ~ 40921412 (-) False XLOC_033075
TCONS_00064274 mRNA downstream 42274 40898877 ~ 40921412 (-) False XLOC_033075
TCONS_00064272 mRNA downstream 64068 40884615 ~ 40899618 (-) False XLOC_033075
TCONS_00064273 mRNA downstream 64068 40884618 ~ 40899618 (-) False XLOC_033075
TCONS_00064278 mRNA upstream 7314 40975655 ~ 40990473 (-) False XLOC_033078
TCONS_00064279 mRNA upstream 9627 40977968 ~ 40992683 (-) True XLOC_033078
TCONS_00064280 mRNA upstream 46450 41014791 ~ 41021880 (-) False XLOC_033079
TCONS_00064281 mRNA upstream 50224 41018565 ~ 41021571 (-) True XLOC_033079
TCONS_00064282 mRNA upstream 55239 41023580 ~ 41028698 (-) False XLOC_033080
TCONS_00064277 other downstream 17211 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 143920 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 196015 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 296223 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 307398 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064287 other upstream 111956 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1441116 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1441883 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1447025 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1984418 42952759 ~ 42970918 (-) True XLOC_033098

Expression Profile

//