RNA id: TCONS_00064280


Basic Information

Item Value
RNA id TCONS_00064280
length 5391
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_033079
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41014791 ~ 41021880 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAATTGCATGATGAAATCCTGTACGGACATATGTACTGTTGAACTCTTCAGTTCAGTCACATAAGTAGAGAGGCTGTTACCGCATAGAGCGAGCTGTCAAGATGGACGAGACTTCGGTGGCCCAGAAAAAGCTCAGCGGTAGAGAGCGAATCACGTTAAGTGGTATGTGTTACTTTTCTCAACGTTGTTAAGAACGACCCAATCACAGTCAAGCTGATTTACCGGCGTTAACCAGTCATTAGATTGATGGCGTGAACGTCTATCTCATATTGAAATCAAACCCTTttcatatttcaaaatgtttcattttattggtTTAACAATCCCTAACTccacaaaaaaaacatattgagATTTTAAAGTAGACCAATATTGAATATCATAATATTGTGAGCCACCAAGCGCCTCCTAGAGACAAGCGACTGTTAATCTTCTAGTTAGCAGTCTGTTTACCTTCGGTCTCccctgtgtttgttttttaacgcTCCGCGTGTCCTCTGCAGCAGGTCATGTATGCCTCACCTTCTATAAAAGTGTGATATTTTAGTGTGTTCGGTAATGCGGGTGCCGGTGCGGTGGGTGCTGTGGGATGTGAAGGACACCTTGCTGAAGGTGCGGCGCTCGGTTGGAGAGCAGTACTGCAGAGAAGCTCAGCAAGCAGGACTCCAGCTGTCCCCTGCTCAGGTGGAAACTGCCTTCAGACTGGCCTACAAGCAAAAATCACAGCTATTGCCAAACTATGGCCGAGCTCAGGGCATGGACAGCCAGGTCTGGTGGACTGGTCTAGTGAGGGACACTTTTGGCCAGTGTGGGGTCCATGATCCTGCTTTGCTGGACAAACTAGCCAACAATCTCTATCACAACTTTTGTGGACCAGAAAACTGGGAGGTGTTTTCAGATTCTAACAGCACCCTGAAGTCCTGCACCGCTTTGGGACTCAAGCAAGAAGACGCCAGGGTTGCTAAACCAGACCCTGCCATATTTAGCCAAGCACTGGAGCGGTGTGGAGTTCCTGCCTCCAGTGTAGTGCATGTTGGGGACCATTATGTGAAAGACTATCTGACCTCTCGCTCTTTGGGAATTCGAGGTTACCTTCTCAACAGAAAAGACGGTCAAAAGACGCACCTTGATATTCCTCCAGAGCATATACTGCAAAGCTTAGATGAACTACCGGCTCGACTGCAGCATAACACAGACTGAGTGTGTGTAATATATagtttagatttaatttaattctgtaatgtactgtcattttatttaattgttattctgCTCTTTAATTATTTGAATAACTGAGTTGTCTAATTGTTATCCACTGCtttgtttaaaagtaaatttTGATATGATGCAGCTCTCAAATTCATTAGGTATGACTGACTGACAGCTATAGTGCCACATATAAACTCActagacactttattaggtacaccttgttCATACTTGGTTGGACCCCATTCAGAACTGACTTAATTCTTAATATTGAATAGAAAGTACTGGAAGACATTAGCACATACTGACATGTTGGCATCACTCAGTTGCTGAAGATTTCTTAGCTTCACATCCATGGTGTGAATTTCCCATCCACCACATATTAAAGCTGCTTTGTTGAACTGAGATCTGGTGAATTTGGAGCCACACGAGTATGTGATACTGATGCCCTTCTACTCTCCTCTAACCTCAGGCATTAAAAAAAGTGTGCAGCTCACTGAATATAATCTCTCTCGCTATAATCTGAAAATCTCAAGAGCAACCATTTCTGAAATGCTAGTTCAATGTcacttaagggatagttcacacaaaaacaaaaattctctcatttacggcagctagctctctgcaactctcacatagtcatccactgaagccaagcagagCTGCGTCCTGTCAGTACCTGAAtagaagaccacatgggaaagctaggttgtgcCAAAAGTGGTGTTTGTGAGAGCCTGACAGCTGTGTGGGTtttaacgccccagtatattgatggggaccttatactgctcagtgaggtCGTtaaaaaattccaggatgtccttcgaaaaaaagagcaggggtttaaccccggcatcctagCCAAATTTGCGCTCTGGCATCTGTGCCTCCTAAGCATCCCcatgtcataattggcttcatcactctgtcttctctcctcatcagctggtgtgtggtgtgcaatatggctgccatcgcatcatccaggtggatgctgcacgctggtggtggatgaggagattccccccgaaaatgtgtaaagcactgaGTAtctagaaaagcactatataataaatgtaaggatttatcattattatttatgaacACTTGACTCGTTCCAAACCAGTtttagatttttgttgttgttcacttAAATGCagaagaaggtattttgaagaatgttgaaaaccagtaactattgacttccattgaattattttttcctattatggatgtcaatgtttACAGTGTTAAACCAAACAAGACTTGGAACAAGACAAagattagtaaatgatgacagaattttaagtttttgttGAACTATtcctgatgaaaaaaaaaaacagcataagctgtaaggtatgttttgatgctggtatgcTGGTTTTATTGCTGGTCTTAGTGCTGGTCTCGATGCTGATCTCAATGCTGGTTAGGACCAGCACTGAAACCAGCAAGATCAGCTCTGAAACCAGCATCGagaccagcattaaaaccagcaagaccagcataaaaacatacaaaatgctgttttttttttttcagcagggatctcTTTAAATCCCTATTCCAATGATGCGTTTTAGCAGATCTTGACCACGTCAACATACCTAAATGCAGTGAGTGCCTTGTATGCCATTGATAGTTTCACCTTTCAGGCATTACTAATGGGCtaaatgcacagctagtgtttttcagccaatgaagaacttccggtgaaagcctaatgtgaatattttaaattttcaagttcattttacagcatcaatgttgtaatgtaattcaaatataatcagttaaatagacacAAGTGTCCATTTGGTTGTTTACACGTAAAAAGAGATAGAAAAACCGTTTAAACGCAGGCGCCGTCCTTAGCTGCAGGCTAGTCCAGacactctattgaaaatactgtggtaaacttaatttccatattttaaggAGATGGCCCGGAAATAcatcatttatttcagtgtttcttgtttggtctgatacccactttgtATTGTATCTCACCTAGGCACtcgcttttttttatttctcaagttctgcaggttgcaatgtcccgGATTTTGGTTGCCGATCTTAAGCCAACTGTAATGGAGTGTTTTGGTTCAATTCAGAATTTCCCCAACTAGCGCAGAGCCCGGGGGACCAGAGTGAGTGCTCTACCTCTCACTCtgcgattttgtatgggatgacagttcaccggaagccctggggctggctgactgaaatcaAAAGTCCGTGTGCAAATACCCCACTGGGTTCGAAATGTTTTGAGTGctgaccagcagatggcgctgctGTAGATCTAATGAAGTGGACAGACTGGGGGATGTTATTAGTGCAAGATGGTGTGACAGCTGAACCATCTGGATTTGCATTGTCGGACAACATCAGCTGAAAAACAAGCACAAGCGTTTATATAATagatttctttctcttttttcacACCATTGGCACCATGAGCCACATAACAAATTCTCCAGCGATATCTAGTTCAGATAATGCCATCAAAAACAATAGAAGTAGTCTCTGTAGAGTGCTGATATCATTGTTTCAGCGCAGAAGCTGCCTGGGCTCACAGTGACGAGGGAGATCGCTTAACCCTAATACCCAAATACTCTTATTCCTCTCCATCTGCTCCAGCACAGATATCAGCTCTTGGACAATCGCTAAACTGGGCCAAAACTGACATGCCAACAAAAATAAGAATACATATCATATCGTACTCCACTGTGGAATTTGGATTATGCTCAGAAGATTATGAAACAGGGACAAACACCAGCAGGACTCTTGTTGAATGTCCTCAGGTGTTGTTCACACACACTGGAATATATCctacttttgtgtgtgtttctatatGCTCATTGCTCCGTAAGCGTGTTGTGGATCTTACGGAGTTCCCTCAGCAGAGCGCTTAAAACAAAGCTGGCTTTAGAGGCTCAGCCAGTCGGCTATGAGGGGCTGCGCTGCAATCCAATTGAAAACCCTAATGGGATTGGCAGATGCATCAACTGAGGATCGTGAAGGAGAAGAAAGGGAGAGGAGATGCAGATTAAGAACAGTTAGATGAAATATGCGAAATTATGTTGGGAAGAAAGGAATTATACTGATAATGGGCTacaaattttttaattttgtagacaaaacaatgtttttgatgggaaaattaaaaaaaatttgacgCTAACAAGCACTGATAACACCAATCACTGAATTTCCTGAAAATTAGAATGACTTTAgtggtaaataaaaataaaaaaacagcatattttatGGGGAAATTCTGTGTGAAAGGAGCTAATGTTATGATGTGAAGTGAATGTTTGTAGAATGTTCAGAATAATGCTAAAAAGAGTCATTCTGCTTTATAATTTCAATATTTCCCTTCACACAATATCTGCTGTGAAATAACTAGAGATAATTTACCAGTAAATTAAAAACCGCACTCATTACACAACAGAATTCTGACAATTATTATCTTATACAactggctggaagggcatgcgctgcacaaaacgcatgctggatgagttggtggttcattccactgtggcgacccctgattaataaaccgaaaagaaaatgaatgaatgatgtcacAACTTTCCATTCTGAAAAtcttacagtatttttaaaatggggtctgTTAACATCTATTCCCTGTAATTTATCAGTAGCTTTACATAAACGTCTGTTAAAAGGAACTAATACATTATGAAAAGAAGGGAATATATTTACACTATTAGTACATATCCGGAGTATGGTCTCAAACTGTCATATCATTGTCATTTTAATTATACTAATCTTGTCTGTGAACATTAGGCTAGTAAAAGGCTTTCTTTTTAGCATCTTTCCCTTTTAGGAATTACTAACGGTAAGAGGGGCCTAGTTAGGATTGCTGTAGccaaactgacgtcaacagagaaGGCCCGCCACACTAAATGTGGAAGgcaatggtcagactttgattacacaaactttttttttcttcagtggattaactttgAGGGAATAATTGTTCACCTAATAAACAGCTaaacaaacattgtaaattttcATTTCACATGGACGTTACTGTTCATCTCACTGCTCgcatttttcttttatattgcTATTGAGAGGAAAATGTGCAGCACATTGTTTTCATCTAAAAGTTGTTCtcag

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-118 Predicted to enable hydrolase activity. Orthologous to human HDHD3 (haloacid dehalogenase like hydrolase domain containing 3).

Ensembl:

ensembl_id ENSDART00000187752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065216 lncRNA downstream 46450 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00065214 lncRNA downstream 150713 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065213 lncRNA downstream 150904 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065215 lncRNA downstream 151070 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065212 lncRNA downstream 353467 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00064283 lncRNA upstream 4348 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064291 lncRNA upstream 64728 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00065217 lncRNA upstream 64749 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00065218 lncRNA upstream 429790 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064308 lncRNA upstream 1352940 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064279 mRNA downstream 22108 40977968 ~ 40992683 (-) True XLOC_033078
TCONS_00064278 mRNA downstream 24318 40975655 ~ 40990473 (-) False XLOC_033078
TCONS_00064276 mRNA downstream 91820 40900053 ~ 40922971 (-) True XLOC_033075
TCONS_00064275 mRNA downstream 93379 40898877 ~ 40921412 (-) False XLOC_033075
TCONS_00064274 mRNA downstream 93379 40898877 ~ 40921412 (-) False XLOC_033075
TCONS_00064282 mRNA upstream 1700 41023580 ~ 41028698 (-) False XLOC_033080
TCONS_00064284 mRNA upstream 36063 41057943 ~ 41079209 (-) True XLOC_033081
TCONS_00064285 mRNA upstream 58123 41080003 ~ 41085457 (-) False XLOC_033082
TCONS_00064286 mRNA upstream 58327 41080207 ~ 41091238 (-) False XLOC_033082
TCONS_00064288 mRNA upstream 60338 41082218 ~ 41085443 (-) False XLOC_033082
TCONS_00064277 other downstream 68316 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 195025 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 247120 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 347328 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 358503 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064287 other upstream 58417 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1387577 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1388344 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1393486 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1930879 42952759 ~ 42970918 (-) True XLOC_033098

Expression Profile

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