RNA id: TCONS_00064283


Basic Information

Item Value
RNA id TCONS_00064283
length 639
lncRNA type retained_intron
GC content 0.44
exon number 5
gene id XLOC_033080
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41023580 ~ 41028698 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTCTGAAGTCATTTCggtcactttttatttttattccactTATGCTTGTCCAATTCGCTTCTGATGAAGATGGCCACGCAGGCCGTACGTCTTTTTCGCAAAATGGACGGTCTGTTTGCGGTGTACAAACCACAGGGAGTTCATTGGAAACTTGTTCGTGACACCATAGAAAGCAATTTTCTCAAAGCGCTGAACTCCAGTCCTCCAGCAGCTCCTCGGCGTGAAGTGCAGTTTCAGCTTCTGTCCAGTGGAGAAAACAGCACATCCAAAGAGCTCATTTTATCTCCATCTATGGTTCCTTCTCTGGCGGATCATCCTTTAGTGACAGGTCCTCAGTTTCACAAGGTTCATGTTGGAGTTGGTCATCGATTGGATGCCTTTTCTTCTGGAGTGTTAGTATTAGGTGTTGGGAAAGGAAATAGTGTCCTGGAGAATCTGTGCAAATCACATGTAACCAgggACTATACGATTGAGGGCGAGTTTGGAAAAGCCACCGATAATTTCAGTCACACTGGTCGGGTCATTGAGAAAACTACATATGGTAATATGTTTATTACACTATCAAAATTATTAACCTTAATATCAAGAAactgcagtgcttcccacacatagactttacttggacaggctgcccag

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040704-41 Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to act upstream of or within RNA processing and pseudouridine synthesis. Orthologous to human TRUB2 (TruB pseudouridine synthase family member 2).

Ensembl:

ensembl_id ENSDART00000151101

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065216 lncRNA downstream 57887 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00065214 lncRNA downstream 162150 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065213 lncRNA downstream 162341 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065215 lncRNA downstream 162507 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065212 lncRNA downstream 364904 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00064291 lncRNA upstream 57990 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00065217 lncRNA upstream 58011 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00065218 lncRNA upstream 423052 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064308 lncRNA upstream 1346202 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 1350245 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064280 mRNA downstream 4348 41014791 ~ 41021880 (-) False XLOC_033079
TCONS_00064281 mRNA downstream 4657 41018565 ~ 41021571 (-) True XLOC_033079
TCONS_00064279 mRNA downstream 33545 40977968 ~ 40992683 (-) True XLOC_033078
TCONS_00064278 mRNA downstream 35755 40975655 ~ 40990473 (-) False XLOC_033078
TCONS_00064276 mRNA downstream 103257 40900053 ~ 40922971 (-) True XLOC_033075
TCONS_00064284 mRNA upstream 29325 41057943 ~ 41079209 (-) True XLOC_033081
TCONS_00064285 mRNA upstream 51385 41080003 ~ 41085457 (-) False XLOC_033082
TCONS_00064286 mRNA upstream 51589 41080207 ~ 41091238 (-) False XLOC_033082
TCONS_00064288 mRNA upstream 53600 41082218 ~ 41085443 (-) False XLOC_033082
TCONS_00064289 mRNA upstream 53708 41082326 ~ 41091151 (-) False XLOC_033082
TCONS_00064277 other downstream 79753 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 206462 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 258557 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 358765 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 369940 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064287 other upstream 51679 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1380839 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1381606 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1386748 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1924141 42952759 ~ 42970918 (-) True XLOC_033098

Expression Profile

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