Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064310 |
| length | 687 |
| lncRNA type | retained_intron |
| GC content | 0.35 |
| exon number | 2 |
| gene id | XLOC_033095 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 42377911 ~ 42388608 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006616 | SRP-dependent cotranslational protein targeting to membrane, translocation | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0031204 | posttranslational protein targeting to membrane, translocation | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005784 | Sec61 translocon complex | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005048 | signal sequence binding | molecular_function |
| GO:0043022 | ribosome binding | molecular_function |
| GO:0008320 | protein transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-021016-2 | Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Acts upstream of or within pronephros development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including EVL; anterior axial hypoblast; axis; ectoderm; and mesoderm. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1). |
| ensembl_id | ENSDART00000143910 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064308 | lncRNA | downstream | 1579 | 42374820 ~ 42377284 (-) | True | XLOC_033094 |
| TCONS_00065218 | lncRNA | downstream | 925975 | 41451670 ~ 41452888 (-) | True | XLOC_033085 |
| TCONS_00065217 | lncRNA | downstream | 1287415 | 41086629 ~ 41091448 (-) | True | XLOC_033082 |
| TCONS_00064291 | lncRNA | downstream | 1287682 | 41086608 ~ 41091181 (-) | False | XLOC_033082 |
| TCONS_00064283 | lncRNA | downstream | 1350245 | 41026228 ~ 41028618 (-) | True | XLOC_033080 |
| TCONS_00065219 | lncRNA | upstream | 30592 | 42410224 ~ 42415879 (-) | False | XLOC_033096 |
| TCONS_00064316 | lncRNA | upstream | 563073 | 42942705 ~ 42948829 (-) | True | XLOC_033097 |
| TCONS_00064753 | lncRNA | upstream | 662318 | 43041950 ~ 43047774 (-) | False | XLOC_033101 |
| TCONS_00064754 | lncRNA | upstream | 667469 | 43047101 ~ 43051893 (-) | True | XLOC_033101 |
| TCONS_00064755 | lncRNA | upstream | 677830 | 43057462 ~ 43066469 (-) | False | XLOC_033102 |
| TCONS_00064307 | mRNA | downstream | 1556 | 42369999 ~ 42377307 (-) | False | XLOC_033094 |
| TCONS_00064306 | mRNA | downstream | 9677 | 42345005 ~ 42369186 (-) | True | XLOC_033093 |
| TCONS_00064304 | mRNA | downstream | 41868 | 42291308 ~ 42336995 (-) | False | XLOC_033092 |
| TCONS_00064305 | mRNA | downstream | 41876 | 42291345 ~ 42336987 (-) | True | XLOC_033092 |
| TCONS_00064303 | mRNA | downstream | 88604 | 42145626 ~ 42290259 (-) | True | XLOC_033091 |
| TCONS_00064311 | mRNA | upstream | 29450 | 42409082 ~ 42418225 (-) | False | XLOC_033096 |
| TCONS_00064315 | mRNA | upstream | 553125 | 42932757 ~ 42949184 (-) | False | XLOC_033097 |
| TCONS_00064317 | mRNA | upstream | 572328 | 42951960 ~ 42971184 (-) | False | XLOC_033098 |
| TCONS_00064319 | mRNA | upstream | 595646 | 42975278 ~ 42983843 (-) | True | XLOC_033099 |
| TCONS_00064320 | mRNA | upstream | 622332 | 43001964 ~ 43007264 (-) | False | XLOC_033100 |
| TCONS_00064287 | other | downstream | 1293416 | 41080297 ~ 41085447 (-) | False | XLOC_033082 |
| TCONS_00064277 | other | downstream | 1432388 | 40946357 ~ 40946475 (-) | True | XLOC_033076 |
| TCONS_00064263 | other | downstream | 1559097 | 40795898 ~ 40819766 (-) | True | XLOC_033070 |
| TCONS_00064261 | other | downstream | 1611192 | 40762757 ~ 40767671 (-) | True | XLOC_033067 |
| TCONS_00064247 | other | downstream | 1711400 | 40667347 ~ 40667463 (-) | True | XLOC_033062 |
| TCONS_00064312 | other | upstream | 29825 | 42409457 ~ 42418108 (-) | False | XLOC_033096 |
| TCONS_00064313 | other | upstream | 30592 | 42410224 ~ 42415662 (-) | False | XLOC_033096 |
| TCONS_00064314 | other | upstream | 35734 | 42415366 ~ 42415879 (-) | True | XLOC_033096 |
| TCONS_00064318 | other | upstream | 573127 | 42952759 ~ 42970918 (-) | True | XLOC_033098 |
| TCONS_00064336 | other | upstream | 878213 | 43257845 ~ 43260324 (-) | False | XLOC_033105 |
