RNA id: TCONS_00064312


Basic Information

Item Value
RNA id TCONS_00064312
length 605
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_033096
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42409082 ~ 42418225 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCCTTAAAATAAACCTAGAGCACTTCAAGATACGAATTTTGTAATTCGTGTCATAAAAAAAGACCTGAATCGAAACAAAGagctgttatttttttctgtcgTGTCGTGGTCTTCCTTCTTCCTCTTTCTTTTGTTTATGTCCTGCAGTGTTCTAACGCACGGCGGAGTCCACGAGGGCCAGGATAGCGGTTACATCTTCGGACTGGAAAACCTCATCACCATAATTTCCCAACTTGAGGACCACAGCACAGACTAAACCACCGCTTCGTTCAAACCAGCATGGCATTCAAATGGGGAAATGCTTTGTTCTCTTTCTCTTCCTTGTTTATTCAATCCATTATGACGTCCGGCTCAGTAAAATCTCAGAGCTCCACCTGTTCAGTTGTGTTTGGTGTCTGTTTTTGTGTGCGTAGCGGATTAAAAAAGGGTCGAGAGACTAACATTGAGATCGACAACTTCCTCAGTGTTTAATAGCTTCACTCACTTCCCTTATGTACTGTTACAACATTGACGCCATTGCCCTTTTTGTTCTATTTATTGAAGGTTAATGGTTATTTACTGATTACAAAAAGGACCTGATTTTGTTCCAGTGCTCACTCTGTG

Function

GO:

id name namespace
GO:0007227 signal transduction downstream of smoothened biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0032958 inositol phosphate biosynthetic process biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000828 inositol hexakisphosphate kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-760 Predicted to enable inositol hexakisphosphate kinase activity. Acts upstream of or within positive regulation of smoothened signaling pathway and signal transduction downstream of smoothened. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axis; immature eye; nervous system; pronephric duct; and segmental plate. Orthologous to human IP6K2 (inositol hexakisphosphate kinase 2).

Ensembl:

ensembl_id ENSDART00000132936

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064310 lncRNA downstream 29825 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064308 lncRNA downstream 32173 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00065218 lncRNA downstream 956569 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 1318009 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 1318276 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064316 lncRNA upstream 524597 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 623842 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064754 lncRNA upstream 628993 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064755 lncRNA upstream 639354 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00065220 lncRNA upstream 639868 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064309 mRNA downstream 20849 42377911 ~ 42388608 (-) False XLOC_033095
TCONS_00064307 mRNA downstream 32150 42369999 ~ 42377307 (-) False XLOC_033094
TCONS_00064306 mRNA downstream 40271 42345005 ~ 42369186 (-) True XLOC_033093
TCONS_00064304 mRNA downstream 72462 42291308 ~ 42336995 (-) False XLOC_033092
TCONS_00064305 mRNA downstream 72470 42291345 ~ 42336987 (-) True XLOC_033092
TCONS_00064315 mRNA upstream 514649 42932757 ~ 42949184 (-) False XLOC_033097
TCONS_00064317 mRNA upstream 533852 42951960 ~ 42971184 (-) False XLOC_033098
TCONS_00064319 mRNA upstream 557170 42975278 ~ 42983843 (-) True XLOC_033099
TCONS_00064320 mRNA upstream 583856 43001964 ~ 43007264 (-) False XLOC_033100
TCONS_00064321 mRNA upstream 584720 43002828 ~ 43005901 (-) True XLOC_033100
TCONS_00064287 other downstream 1324010 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 1462982 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 1589691 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 1641786 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 1741994 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064318 other upstream 534651 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 839737 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 1372029 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 1413917 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 1429752 43847860 ~ 43890462 (-) False XLOC_033109

Expression Profile

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