Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064313 |
| length | 844 |
| RNA type | processed_transcript |
| GC content | 0.52 |
| exon number | 4 |
| gene id | XLOC_033096 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 42409082 ~ 42418225 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007227 | signal transduction downstream of smoothened | biological_process |
| GO:0046854 | phosphatidylinositol phosphorylation | biological_process |
| GO:0032958 | inositol phosphate biosynthetic process | biological_process |
| GO:0045880 | positive regulation of smoothened signaling pathway | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000828 | inositol hexakisphosphate kinase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-760 | Predicted to enable inositol hexakisphosphate kinase activity. Acts upstream of or within positive regulation of smoothened signaling pathway and signal transduction downstream of smoothened. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axis; immature eye; nervous system; pronephric duct; and segmental plate. Orthologous to human IP6K2 (inositol hexakisphosphate kinase 2). |
| ensembl_id | ENSDART00000144073 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064310 | lncRNA | downstream | 30592 | 42378863 ~ 42379632 (-) | True | XLOC_033095 |
| TCONS_00064308 | lncRNA | downstream | 32940 | 42374820 ~ 42377284 (-) | True | XLOC_033094 |
| TCONS_00065218 | lncRNA | downstream | 957336 | 41451670 ~ 41452888 (-) | True | XLOC_033085 |
| TCONS_00065217 | lncRNA | downstream | 1318776 | 41086629 ~ 41091448 (-) | True | XLOC_033082 |
| TCONS_00064291 | lncRNA | downstream | 1319043 | 41086608 ~ 41091181 (-) | False | XLOC_033082 |
| TCONS_00064316 | lncRNA | upstream | 527043 | 42942705 ~ 42948829 (-) | True | XLOC_033097 |
| TCONS_00064753 | lncRNA | upstream | 626288 | 43041950 ~ 43047774 (-) | False | XLOC_033101 |
| TCONS_00064754 | lncRNA | upstream | 631439 | 43047101 ~ 43051893 (-) | True | XLOC_033101 |
| TCONS_00064755 | lncRNA | upstream | 641800 | 43057462 ~ 43066469 (-) | False | XLOC_033102 |
| TCONS_00065220 | lncRNA | upstream | 642314 | 43057976 ~ 43072882 (-) | True | XLOC_033102 |
| TCONS_00064309 | mRNA | downstream | 21616 | 42377911 ~ 42388608 (-) | False | XLOC_033095 |
| TCONS_00064307 | mRNA | downstream | 32917 | 42369999 ~ 42377307 (-) | False | XLOC_033094 |
| TCONS_00064306 | mRNA | downstream | 41038 | 42345005 ~ 42369186 (-) | True | XLOC_033093 |
| TCONS_00064304 | mRNA | downstream | 73229 | 42291308 ~ 42336995 (-) | False | XLOC_033092 |
| TCONS_00064315 | mRNA | upstream | 517095 | 42932757 ~ 42949184 (-) | False | XLOC_033097 |
| TCONS_00064317 | mRNA | upstream | 536298 | 42951960 ~ 42971184 (-) | False | XLOC_033098 |
| TCONS_00064319 | mRNA | upstream | 559616 | 42975278 ~ 42983843 (-) | True | XLOC_033099 |
| TCONS_00064320 | mRNA | upstream | 586302 | 43001964 ~ 43007264 (-) | False | XLOC_033100 |
| TCONS_00064321 | mRNA | upstream | 587166 | 43002828 ~ 43005901 (-) | True | XLOC_033100 |
| TCONS_00064287 | other | downstream | 1324777 | 41080297 ~ 41085447 (-) | False | XLOC_033082 |
| TCONS_00064277 | other | downstream | 1463749 | 40946357 ~ 40946475 (-) | True | XLOC_033076 |
| TCONS_00064263 | other | downstream | 1590458 | 40795898 ~ 40819766 (-) | True | XLOC_033070 |
| TCONS_00064261 | other | downstream | 1642553 | 40762757 ~ 40767671 (-) | True | XLOC_033067 |
| TCONS_00064247 | other | downstream | 1742761 | 40667347 ~ 40667463 (-) | True | XLOC_033062 |
| TCONS_00064318 | other | upstream | 537097 | 42952759 ~ 42970918 (-) | True | XLOC_033098 |
| TCONS_00064336 | other | upstream | 842183 | 43257845 ~ 43260324 (-) | False | XLOC_033105 |
| TCONS_00064349 | other | upstream | 1374475 | 43790137 ~ 43890462 (-) | False | XLOC_033109 |
| TCONS_00064350 | other | upstream | 1416363 | 43832025 ~ 43890432 (-) | False | XLOC_033109 |
| TCONS_00064351 | other | upstream | 1432198 | 43847860 ~ 43890462 (-) | False | XLOC_033109 |
