Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064318 |
| length | 703 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.45 |
| exon number | 7 |
| gene id | XLOC_033098 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 42951960 ~ 42971184 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007049 | cell cycle | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:0051301 | cell division | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0005768 | endosome | cellular_component |
| GO:0005774 | vacuolar membrane | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0031902 | late endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005525 | GTP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9370 | Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in autophagosome-lysosome fusion; late endosome to lysosome transport; and lysosome localization. Predicted to act upstream of or within cell division; chromosome segregation; and protein transport. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8B (ADP ribosylation factor like GTPase 8B). |
| ensembl_id | ENSDART00000150508 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064316 | lncRNA | downstream | 3930 | 42942705 ~ 42948829 (-) | True | XLOC_033097 |
| TCONS_00065219 | lncRNA | downstream | 536880 | 42410224 ~ 42415879 (-) | False | XLOC_033096 |
| TCONS_00064310 | lncRNA | downstream | 573127 | 42378863 ~ 42379632 (-) | True | XLOC_033095 |
| TCONS_00064308 | lncRNA | downstream | 575475 | 42374820 ~ 42377284 (-) | True | XLOC_033094 |
| TCONS_00065218 | lncRNA | downstream | 1499871 | 41451670 ~ 41452888 (-) | True | XLOC_033085 |
| TCONS_00064753 | lncRNA | upstream | 71032 | 43041950 ~ 43047774 (-) | False | XLOC_033101 |
| TCONS_00064754 | lncRNA | upstream | 76183 | 43047101 ~ 43051893 (-) | True | XLOC_033101 |
| TCONS_00064755 | lncRNA | upstream | 86544 | 43057462 ~ 43066469 (-) | False | XLOC_033102 |
| TCONS_00065220 | lncRNA | upstream | 87058 | 43057976 ~ 43072882 (-) | True | XLOC_033102 |
| TCONS_00064337 | lncRNA | upstream | 294074 | 43264992 ~ 43266006 (-) | False | XLOC_033105 |
| TCONS_00064315 | mRNA | downstream | 3575 | 42932757 ~ 42949184 (-) | False | XLOC_033097 |
| TCONS_00064311 | mRNA | downstream | 534534 | 42409082 ~ 42418225 (-) | False | XLOC_033096 |
| TCONS_00064309 | mRNA | downstream | 564151 | 42377911 ~ 42388608 (-) | False | XLOC_033095 |
| TCONS_00064307 | mRNA | downstream | 575452 | 42369999 ~ 42377307 (-) | False | XLOC_033094 |
| TCONS_00064306 | mRNA | downstream | 583573 | 42345005 ~ 42369186 (-) | True | XLOC_033093 |
| TCONS_00064319 | mRNA | upstream | 4360 | 42975278 ~ 42983843 (-) | True | XLOC_033099 |
| TCONS_00064320 | mRNA | upstream | 31046 | 43001964 ~ 43007264 (-) | False | XLOC_033100 |
| TCONS_00064321 | mRNA | upstream | 31910 | 43002828 ~ 43005901 (-) | True | XLOC_033100 |
| TCONS_00064322 | mRNA | upstream | 48724 | 43019642 ~ 43047774 (-) | False | XLOC_033101 |
| TCONS_00064323 | mRNA | upstream | 48841 | 43019759 ~ 43028270 (-) | False | XLOC_033101 |
| TCONS_00064312 | other | downstream | 534651 | 42409457 ~ 42418108 (-) | False | XLOC_033096 |
| TCONS_00064314 | other | downstream | 536880 | 42415366 ~ 42415879 (-) | True | XLOC_033096 |
| TCONS_00064313 | other | downstream | 537097 | 42410224 ~ 42415662 (-) | False | XLOC_033096 |
| TCONS_00064287 | other | downstream | 1867312 | 41080297 ~ 41085447 (-) | False | XLOC_033082 |
| TCONS_00064277 | other | downstream | 2006284 | 40946357 ~ 40946475 (-) | True | XLOC_033076 |
| TCONS_00064336 | other | upstream | 286927 | 43257845 ~ 43260324 (-) | False | XLOC_033105 |
| TCONS_00064349 | other | upstream | 819219 | 43790137 ~ 43890462 (-) | False | XLOC_033109 |
| TCONS_00064350 | other | upstream | 861107 | 43832025 ~ 43890432 (-) | False | XLOC_033109 |
| TCONS_00064351 | other | upstream | 876942 | 43847860 ~ 43890462 (-) | False | XLOC_033109 |
| TCONS_00064352 | other | upstream | 908457 | 43879375 ~ 43890427 (-) | True | XLOC_033109 |
