RNA id: TCONS_00064319


Basic Information

Item Value
RNA id TCONS_00064319
length 1540
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_033099
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42975278 ~ 42983843 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTTTGCGTGTTCAGTGTTCTCTTCAAACGCCTCTGCTAAACGTCACAGGCAGACTAGTTTAAAAGAAGTGAAAATGAAAACAGAACGCATTGGTAATGCACCACAGTGACAGAATGAACACTGTTAAGCTCTGGGTTACACTGCTCTGTGTCTGTGGAAGAGGGATTTTGAGTCTGGACTGTGACTGGACCACTGAGTATGAAGGTAACAACAGATGCTGTAAAGCCTGTCCTGCAGGCGAGTATCCTATATCGGCATGTTCACAAGACAGGACAGACAGTCTGTGTGAGAAATGCCCTTCAGATTTAACACATCTTTCAGCTGAGAACAGATGTTTCTGCAAAGATAAGCATTTATGCGCTGGTTATCAATGTGAAGATTGTCAACCCAGAGAGAAATGTAAACCTGGACAACAGCTGATGAGAATTGGTAATTTTCATTTCAGTTTCCACTGTGCGCCATGCCAAAACAACACTTACAACGATGTTGAGGACAGCACGTGTAAACCTATTACAAAGTGTGATGGTGTTGGTGAGTTCTTCCCAGGAAACCAGACCCACAATGCAAATTGTGTCCCTGAAGAAGTCATTCCTGATACTACAAAAAGTCCTCCTGAACAAAACAGGAGCCAGTATTTTCAATCTTTGATGGTGGCCTGTATAACCATCACAGTCTTGACCTGCCTGGTTTTCATCACACTTAGTGcttttcagattttcaaatacAAGACGTTCATAAAACTAAATCGCAGTAAACTGTGCACTCATACAAGGGTAGTGTCCTCAGAATCATGCAAACTCTCTAAGGAGGAAAGAGGCGAAAGTGACCATGAGCACAAGATAGACCTCTCTGAAGACTGCTGTGACCACAGCTTTCCTTAAAAACTCACGACAACTGCAACATAAAGCTGAACAAGATTGATTACATAATACACCTTAACGATCATGTCCATGCAGGGTCTATTTGGACATGGACTTTATTGATCTGCACAAAAGCCCTCAGAAACTGATCCGCTTACAGAGAAGTCAGCAAAAAAGGTGCATGTTTGCATTAGCTCTTTGACATTGAGTTATCCAATTGTGTTTTCTCTTCGTATAGCACTGTAAAAGACAGTAGCTTATACTCCAACATATGGAACTATTGGCTGAAACAATGCCAAGCTTTGTACTGAACATTTtgtattttcatctgtttttatgtGAATTATCATGAGATAAGGTTTACTCTCTGCTTGCATGCATAGTCTTGCTTTTCTGCCTCGTTCATGTCTGTTGATTGGCCAGTAAAGCACTATTATTCACTGTCTTGTATTAACACAAATCAATGTTCTTTTCGAAATGttcttttcattctttcttttgaaAGAATGAGAATAAGCTGTGCCTAATTTCCTGATGCCAGAAATGTGACTTTGCATACAGGGAGTAATTTATTGTTGTGTATTTTGTAAATGCTAATTCAAACTTGAGTCCTTTATGAGTTCTATAATGGAGGCAACctgtaaatttaaatgtatcatAGTAAAAAAATTACCATAT

Function

GO:

id name namespace
GO:0045785 positive regulation of cell adhesion biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005031 tumor necrosis factor-activated receptor activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-101104-7 Predicted to enable tumor necrosis factor-activated receptor activity. Predicted to be involved in positive regulation of cell adhesion. Predicted to act upstream of or within negative regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in external side of plasma membrane. Is expressed in gut; kidney; spleen; and thymus. Orthologous to human TNFRSF18 (TNF receptor superfamily member 18).

Ensembl:

ensembl_id ENSDART00000130666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064316 lncRNA downstream 26449 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00065219 lncRNA downstream 559399 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064310 lncRNA downstream 595646 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064308 lncRNA downstream 597994 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00065218 lncRNA downstream 1522390 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064753 lncRNA upstream 58107 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064754 lncRNA upstream 63258 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064755 lncRNA upstream 73619 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00065220 lncRNA upstream 74133 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064337 lncRNA upstream 281149 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00064317 mRNA downstream 4094 42951960 ~ 42971184 (-) False XLOC_033098
TCONS_00064315 mRNA downstream 26094 42932757 ~ 42949184 (-) False XLOC_033097
TCONS_00064311 mRNA downstream 557053 42409082 ~ 42418225 (-) False XLOC_033096
TCONS_00064309 mRNA downstream 586670 42377911 ~ 42388608 (-) False XLOC_033095
TCONS_00064307 mRNA downstream 597971 42369999 ~ 42377307 (-) False XLOC_033094
TCONS_00064320 mRNA upstream 18121 43001964 ~ 43007264 (-) False XLOC_033100
TCONS_00064321 mRNA upstream 18985 43002828 ~ 43005901 (-) True XLOC_033100
TCONS_00064322 mRNA upstream 35799 43019642 ~ 43047774 (-) False XLOC_033101
TCONS_00064323 mRNA upstream 35916 43019759 ~ 43028270 (-) False XLOC_033101
TCONS_00064324 mRNA upstream 36794 43020637 ~ 43027828 (-) False XLOC_033101
TCONS_00064318 other downstream 4360 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 557170 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 559399 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 559616 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 1889831 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064336 other upstream 274002 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 806294 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 848182 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 864017 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 895532 43879375 ~ 43890427 (-) True XLOC_033109

Expression Profile

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