RNA id: TCONS_00064321


Basic Information

Item Value
RNA id TCONS_00064321
length 537
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_033100
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43001964 ~ 43007264 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgaacagcacttttttgaatataccgGCAGTAATGTAATCAATGAGTGTACACTTACCAGCGACACTCAGTGCAGATGTATGAAAGGTTTTACACCTGTCGATACACTAAAAGAAGAGGTTTGTGTCTGTAAAAAGGGTTCTGGAGTGAATAAGAAAGGAAATGAATGCCAAACATGTAGCCAAGGATTCTTTACAGATAAAGATGACACAGCTTGTCAAAGATGGAAGGAGTGTAAAAATGGGGTTAATATCTCAGGCACCACTACTTCAGATGTTGTCTGCAATAACATAAAGACAGAGGAGATAAAAGCTCCTACAATCTTGATTCCCTTGTTCCGGACAGCCAAACCCACTTTTGCAGCCACTTTAGGAACTCAGACCACTTCAGGAACTACGACCACTTCAGAGACTAAGACCACATCAGGAACTACGACCTACTCTCCCGGAGAAAAAGCAGACAGCTTCTACATCTTCTGGCTGATTATAATTTGTGCTACTACTACTCTTCTCCTTGCTGGATTCTTGTACGGCAAGA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-906 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9).

Ensembl:

ensembl_id ENSDART00000161071

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064316 lncRNA downstream 53999 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00065219 lncRNA downstream 586949 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064310 lncRNA downstream 623196 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064308 lncRNA downstream 625544 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00065218 lncRNA downstream 1549940 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064753 lncRNA upstream 36049 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064754 lncRNA upstream 41200 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064755 lncRNA upstream 51561 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00065220 lncRNA upstream 52075 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064337 lncRNA upstream 259091 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00064319 mRNA downstream 18985 42975278 ~ 42983843 (-) True XLOC_033099
TCONS_00064317 mRNA downstream 31644 42951960 ~ 42971184 (-) False XLOC_033098
TCONS_00064315 mRNA downstream 53644 42932757 ~ 42949184 (-) False XLOC_033097
TCONS_00064311 mRNA downstream 584603 42409082 ~ 42418225 (-) False XLOC_033096
TCONS_00064309 mRNA downstream 614220 42377911 ~ 42388608 (-) False XLOC_033095
TCONS_00064322 mRNA upstream 13741 43019642 ~ 43047774 (-) False XLOC_033101
TCONS_00064323 mRNA upstream 13858 43019759 ~ 43028270 (-) False XLOC_033101
TCONS_00064324 mRNA upstream 14736 43020637 ~ 43027828 (-) False XLOC_033101
TCONS_00064325 mRNA upstream 17100 43023001 ~ 43028370 (-) False XLOC_033101
TCONS_00064326 mRNA upstream 17431 43023332 ~ 43028896 (-) False XLOC_033101
TCONS_00064318 other downstream 31910 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 584720 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 586949 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 587166 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 1917381 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064336 other upstream 251944 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 784236 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 826124 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 841959 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 873474 43879375 ~ 43890427 (-) True XLOC_033109

Expression Profile

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