RNA id: TCONS_00064753


Basic Information

Item Value
RNA id TCONS_00064753
length 607
lncRNA type sense_over
GC content 0.37
exon number 2
gene id XLOC_033101
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43019642 ~ 43051893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTAATGTGAGGGAGATGGAGCTCTTCTATCTTAATTAACAGTAAGTGAATGTGTGTTTTACAGGGGGTGAATGCAGTTGTCTTTACCTGTGTTACAGCACATGCTTCAGAGGAGGGAAGTTTTGCAGTCTCAGCATCCCCCAACATCACTGGGTCTCTGATAACAGTAATTATGCTGCCACAGCAGTGTGGACCCCTTTGGAGAAGATGTTGAATTATCACATTTGACTGCATGAAGCTTCCCTAAAAACCTTACACATTCGACCATAGAGGTGGTCAAATCACTGTTCTTCTCTATCTAAATGACTCTGATGTACCATTTAATCACAAAATAGATTGGGGCTATTGCACCAGAAAGTTATGGAAACTACACTGGAAATCTGAGGTGccgtttacacacatttttcataatcaaaaatcagaaagagctttattaccaggtatgttcacacatacagtacaagaaattagtttttatgacagagcttctacagtgcaacagaattacagagacaggacaaaaaacagataataaatatatatttaaaaatagaagtaagtagtgaatgcaaatatacaaattaacaagtgtatgtacaggtatat

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008887 glycerate kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway
ko00630 Glyoxylate and dicarboxylate metabolism
ko00680 Methane metabolism
ko00561 Glycerolipid metabolism
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064316 lncRNA downstream 93121 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00065219 lncRNA downstream 626071 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064310 lncRNA downstream 662318 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064308 lncRNA downstream 664666 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00065218 lncRNA downstream 1589062 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064755 lncRNA upstream 9688 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00065220 lncRNA upstream 10202 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064337 lncRNA upstream 217218 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00064338 lncRNA upstream 220735 43268509 ~ 43294761 (-) True XLOC_033105
TCONS_00064339 lncRNA upstream 299155 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064326 mRNA downstream 13054 43023332 ~ 43028896 (-) False XLOC_033101
TCONS_00064325 mRNA downstream 13580 43023001 ~ 43028370 (-) False XLOC_033101
TCONS_00064323 mRNA downstream 13680 43019759 ~ 43028270 (-) False XLOC_033101
TCONS_00064324 mRNA downstream 14122 43020637 ~ 43027828 (-) False XLOC_033101
TCONS_00064320 mRNA downstream 34686 43001964 ~ 43007264 (-) False XLOC_033100
TCONS_00064327 mRNA upstream 28742 43076516 ~ 43092175 (-) True XLOC_033103
TCONS_00064328 mRNA upstream 171077 43218851 ~ 43221581 (-) True XLOC_033104
TCONS_00064329 mRNA upstream 172417 43220191 ~ 43251192 (-) False XLOC_033105
TCONS_00064330 mRNA upstream 174750 43222524 ~ 43233373 (-) False XLOC_033105
TCONS_00064331 mRNA upstream 178021 43225795 ~ 43233700 (-) False XLOC_033105
TCONS_00064318 other downstream 71032 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 623842 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 626071 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 626288 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 1956503 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064336 other upstream 210071 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 742363 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 784251 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 800086 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 831601 43879375 ~ 43890427 (-) True XLOC_033109

Expression Profile

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