RNA id: TCONS_00064329


Basic Information

Item Value
RNA id TCONS_00064329
length 159
RNA type mRNA
GC content 0.32
exon number 6
gene id XLOC_033105
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43220191 ~ 43387920 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGATTGAAAAGCGTGAcccatctctctttctcttcagtattatggtcatgacgtattttctGTTCTCCAGTTTTGGTTATATCTTTTACTTTTTGTTTGGGCTAAAATTGATTCTATaTACTTTGTTCTTGTATATCAGTTTGAAACTGGCAAATCTA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130412-1 Predicted to enable cytoskeletal protein binding activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction and bicellular tight junction. Orthologous to human FRMD4B (FERM domain containing 4B).

Ensembl:

ensembl_id ENSDART00000191955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065220 lncRNA downstream 147309 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064755 lncRNA downstream 153722 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00064754 lncRNA downstream 168298 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064753 lncRNA downstream 172417 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064316 lncRNA downstream 271362 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064337 lncRNA upstream 13800 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00064338 lncRNA upstream 17317 43268509 ~ 43294761 (-) True XLOC_033105
TCONS_00064339 lncRNA upstream 95737 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064354 lncRNA upstream 728519 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA upstream 737364 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064327 mRNA downstream 128016 43076516 ~ 43092175 (-) True XLOC_033103
TCONS_00064326 mRNA downstream 191295 43023332 ~ 43028896 (-) False XLOC_033101
TCONS_00064325 mRNA downstream 191821 43023001 ~ 43028370 (-) False XLOC_033101
TCONS_00064323 mRNA downstream 191921 43019759 ~ 43028270 (-) False XLOC_033101
TCONS_00064335 mRNA upstream 356 43251548 ~ 43262400 (-) False XLOC_033105
TCONS_00064340 mRNA upstream 186882 43438074 ~ 43449013 (-) True XLOC_033107
TCONS_00064341 mRNA upstream 240443 43491635 ~ 43498996 (-) True XLOC_033108
TCONS_00064342 mRNA upstream 350951 43602143 ~ 43882696 (-) False XLOC_033109
TCONS_00064343 mRNA upstream 351084 43602276 ~ 43792179 (-) False XLOC_033109
TCONS_00064318 other downstream 249273 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 802083 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 804312 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 804529 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 2134744 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064336 other upstream 6653 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 538945 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 580833 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 596668 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 628183 43879375 ~ 43890427 (-) True XLOC_033109