RNA id: TCONS_00065222


Basic Information

Item Value
RNA id TCONS_00065222
length 5002
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id XLOC_033118
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45923942 ~ 45929175 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTGTGAAAAGCCACTGCTGAATAATCTCATAGTATTCATCGTGTTCTCGTTTATAGCAACAGCCCTTTTCCTTCACACTGAAGGTTTGTCTATAGCGATTACACTCACAGACCCAGTTCCCAAAACCATCCGGGCAGCGTTTCACACATTTGGTCTGTTTTCATTCATTGAGGGACTCTGTACAGTCATTTTAACCTTGACTGCACCTCAGTGTgcaAACACCACCACAGAATTGTACATATTTTCGTTGGTAGCCTCTTGGGCCTGCATATTCTCAACAGCTTTCTTTGTAGTCAGAGGAGGTCTCTGCCTAGTCCATAAACTATTTCCTCATTGGTTAAGAGATGCGTGCCTCTGGGACTGAAAAATGAGCTTCTACTACCTTCACTGACACTCAATACAGGtgcatttattattaacatgCTTTCAGACAGTTGTGAGACTCTATTCATCGATATCTCTTTTCACCAATATTAGCATACAATGGAGGCGAGAAAATAGacagactgcatttatttaaagaaaacttAAGCATTGTGTTTAGAGTCTGATTATTTGGGATGTGTACTTTGCTCAAATGCATtgtaacaaaagaaaaagaaataaaaacactgatgctttcaaaaatatattttattgctatGTAGTAAAACCACTGCAAAATATGAAATGGTGTTTTTGATGCTGTGTAATACAGTTGTGTGTAATGGCATGTAATACAAGTGAATACCGTAACAACAGTTCCTGGAAACATATAATGGAAAAGCAAtacaccatagatatatacactagatatcacatatggaccctgagtatgcgtcaatagcgctgccACATTTGTACAATGCTCCCACCACAGATGTCATTCAACCTAACTAAACAAGACTAAAGCTAATGTTAAGTTGCttgactttagcgctgtgtacgggtgtatTAGCGtgcaaacacaataaaacaaagcataaatgcagaacatttcataggtaagattttgtttttgtatgttatgaactatTGTGCTTAACAATTAATGTTATCGATAGTGATGTCACTTACTGCACTGATCATGAGGCAAAGTAGCATCAACTTGCTCAAAATTCTAGGTTTATgcttttgttaaattaaataagcaaataagatgctgcggtgccagaaaatTTTATTATTGTGGTCTAAGCGAATGAGTCtttcataacagagattcattcataaacaaatcgctccctccctTAAAATGAGAGGTGAAAGCGgaagagggggtgtgtttcaggacacagatcagatcaaatttaacagggagggaggataatacattttcatgcacacaaacatacgcTTTTGTCAGCAATGCCCGTATGGTCACTTATTCATCAATGAAGAGaagtgatgtcaaattataattttcttaattaaaaaaaaaattgcatatataGATCAATGGGAAAACTTCCCATTATAGATGCATGTATATTTGTCTGTATATCTTTAGCTCTGggtggccagtcctccactgcaccttggtcccaaaTTTAATTCAAAGGAGTggtaccctgtactaaaatggcagctctattgacacattccttccaatagacaacaacaaggTGCTCCCttggcgacatctaatgtaaatatctatggcaaTACACTTCATTGAGAAGTGTCAGTTCATGTTTTAAACCTCTCTGCAAGGCACATACTTTCTTGGAATACACACAGTAGGATTTGTACAATGTTACACATTATTTATAGGCACTTTACGAAAACCACGAATCAATTTAAACAGAATTTAGAGTGTGATTTTAAAACCCAGTGCATTTATTcgaaagttttattaatattttcacaaaTTAGATGATCCGATTCATGTGGAATGTAATGTTCTGATTCACTACACAATGTTTGGCAAACCACTGGCTATGACACTGGTCTCAAACTGAATTCCTGAAGATCCGCAgatctgcagagtttagctccaaccacctccaaatcacacctgcttaatagtctcttgCAGTCTTTAACACCTTGATtaattggatcagctgtgtttgattagggttggagcaaaacggcggcccttcaggaattaagtttgagacccaTAGGCTTTGATAATACTACCCAGCTGTCCATAAAAGTCTTGCAGTGTCTCAAAAATCATGAAATGTGCTTCTTCAATTTAAACAATATCTGTAGAAAGGCATTCATGTTAAGATATGAAACCAATGTAAGGCGTTGTGCCATCTGAATTGCTTGACACACAATAAACCATTGTTTATGGAGGAATGACAAACATTTTTGACAGTAATACACTCTGTCAACAGTGTAGGTATGGAATGGTTTCATCAAGTAAGGTTAACTGAAACTCAGTTCAGTCtaaaaaaatgttgcatttaCATTTGTTCAGTCCTAAAAGCATAAGAAATGCCATCTTAGGCATGTTTTGTGATCTTGTTTTATGAGTATTAAACCTGAGTTCTGAAATTATATATGATTTCACCTTTAATTGAAATCCTTGAATAACAAGGAAGGAAAAGAaaccaaatataataaaaagaagCTAATTTAACCTGGCAGTGTGTAAATTAACAGGAGTAAGTATAGTTACACTGGggggaaaaaaagtcaaattacaGAGCACTCCAATATCTGTTCTCTTATCACCTTTTGGTCTCAAATGCGCAAAAGTGCTTTATGTGGAATGACATTTTTCATACATGTCCTAATAACTGCCATCTAAACTGAATTGTCTTGTGACGAATGTTAGCAAAAGTGAAAATTATCACACAAAATGACTAATTACACGAACCTAACAGAGTTCCTGAGATTTGAAATAGTAACCTTTTTGTAAATTCTATCATTTAAATGCATTCATTCCTTAATCCATCAATCAAATTACAAAGTTCCTTTCACAGCATTAAAATAACTCTGACAAATCCCACCTCATTTGGTGCATAAATGGAACTTCAAATGATACTGCAATCATTCACTATACAGCATTTCATTTCAGCTAGACGCCCTGATGGGTGGCTTCACTGACCAATCTATGCTGGAATTTTATCCTAGTAATGCATCATAATCAATGTACCATATAAGACTACCATTATTTGGCTGTACTTTGGTAATGGGGTACCTTGATGATTCCCCCTTAATTCGACTAAGCTGAGTAACAAGTTCATGCTTGCTCTTCCCCATTACTAAAACACCGACCCTTCGAGCCTTATTAATGGCTGTGAATGTCAGACTCATCCTTTGATGAGGTTTAATGGGGCTCTCTGTCAGGGTTACCAACCGTTCTCCATCGCTTTCCAATTTGGTGTCCTGGAATAAAGAGGCAGTATGGCCATCCTGGCCTACACCTAGCAGAATGTAATGGAAGCTAGAGGCATTGACATGCTTTTGGATTTCCTTCTCATATAATGTAGCACCACCATCCTCTTCCACACATAACCGCTGCGTGAGATGCACTGGCATAGGATGGATGTTGAAGTAGGGTATGCGGATATGCTGAAGCAGGAGATCATGAATTGACCGGAAGTTAGAGCCTGACTCTGTATGTGGCACACATCTCTCATCTACTTGCCATATGTGAGTGTTTCGCCATGGAAAAGTGTAAAGGTTGAGGGCTAGTGCACGGAGCAGTGCAACCGGGCTGGAGCCACCAGACAATGCCAGATGAAACTGACCTTCTCTGCGAATGGCCTCCTCGGCAGCCAGCAGAAGATCAGAAGCCAAGCGTTCCACCAGTTCCTGCGCCCAGGCAGAAATCATTTCAGAACTACGGTACTTCCCTTGCATCACCTGGAAGTTCTCTTCAGCTCCACGGTTGATAACATTGACCACAGCTTCATGGCTGAAAGCAATCTGATGACCCCGTAGCTGAAAATTTAGCAGGTTCCCGTTGCTCACACCACCAGGATAAATCCGTGGATAGACGTGAGACAGGCTTTCAAGGAGGGGTGTCCAAAACGCCCAGGAAGCAAGAAGTCCTTCGGCACTGATAAAGCTATCCTTGCGTCCAAAGAAGACGTGCGAGATCAGCTCGCCATAAGCCTCTCTGGGTGCAACTGGTGACTGGATGTAATAATCACTAAGTGGTAAACCCAGCAGGTTCACTTCTTTGTATTCAGTGACTTCCTTCCAGTCACCGCTGCTCACTATCTCAGGTTTGAGCAGGTTCTTGCTCACGAGAATGGAAGGGTATTGGAGGTTGCCGTGTCCCAGATAAAATATAATCTGTTTGGATTTGCACTGAACATTGTTGGGATCCTGGACGCAAAACACATCGCTTTTGAAAAGGACACGTGCATAACTGACCCGTTCATCGAGAGCCTTGCCTGAGGTCATAAATATGGGGATGCCCTCGTATTGTGCATTGTCAACATGAATAACCACACCTGAAAAGAGTCAAGAAAAGCATGATTTTACAGACGAACACTGCTTTAAATctgtgactgtttacatgcacATGAACCATCACCTTTAGGGTCAGAAatatcaaactcaattcctggagggccacagccctgcagtttagttctaaccctgcttCAACTCTctaacctgtaggttttaaaacaagcctaaaggactcaattagttggatcaggtgtgtttaattagggctgtACTAAACTGCagaactgcggccctccaggaactgagtttgacacttgtGTTTTAGGTGATTTatgccgtactcacactaggtacagttgcctcgaaccaggccaaagcacgcttgtcccccgtcccgtctcccccgacggcccgcactcacaccacaaatgggcctcggcacgctacgtcatcgctgctgtgctgttcagtgagaagcgctctctcactcagcagcacagtggagatttctccagttatattgtttcagtcgtttgatatgcagtcaaatatttcgccaaacagtccgtagggatgcggtgacacgcagtcagatatttcgccaaacagatccgccacttttggcgctcataaacaat

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0043137 DNA replication, removal of RNA primer biological_process
GO:0000280 nuclear division biological_process
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064365 lncRNA downstream 44802 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00064354 lncRNA downstream 1921400 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA downstream 1921401 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064339 lncRNA downstream 2574856 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064338 lncRNA downstream 2629181 43268509 ~ 43294761 (-) True XLOC_033105
TCONS_00064370 lncRNA upstream 173039 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00064373 lncRNA upstream 365186 46294361 ~ 46310011 (-) True XLOC_033123
TCONS_00064380 lncRNA upstream 638959 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00064398 lncRNA upstream 1906178 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00065223 lncRNA upstream 2050130 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064364 mRNA downstream 18196 45874595 ~ 45905746 (-) False XLOC_033117
TCONS_00064362 mRNA downstream 54778 45843193 ~ 45869164 (-) False XLOC_033116
TCONS_00064363 mRNA downstream 54815 45844507 ~ 45869127 (-) True XLOC_033116
TCONS_00064361 mRNA downstream 1212000 44584775 ~ 44711942 (-) True XLOC_033115
TCONS_00064358 mRNA downstream 1521584 44243070 ~ 44402358 (-) False XLOC_033114
TCONS_00064366 mRNA upstream 8602 45937777 ~ 45949121 (-) True XLOC_033119
TCONS_00064367 mRNA upstream 22718 45951893 ~ 46162585 (-) False XLOC_033120
TCONS_00064368 mRNA upstream 23368 45952543 ~ 46053300 (-) False XLOC_033120
TCONS_00064369 mRNA upstream 43272 45972447 ~ 45995401 (-) False XLOC_033120
TCONS_00064374 mRNA upstream 424735 46353910 ~ 46398584 (-) False XLOC_033124
TCONS_00064360 other downstream 1643728 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064349 other downstream 2033480 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064371 other upstream 238842 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other upstream 298942 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064391 other upstream 1227127 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064395 other upstream 1673424 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064408 other upstream 2451070 48380245 ~ 48381223 (-) True XLOC_033145

Expression Profile

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