RNA id: TCONS_00064401


Basic Information

Item Value
RNA id TCONS_00064401
length 449
lncRNA type antisense
GC content 0.47
exon number 4
gene id XLOC_033141
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 47979305 ~ 48061659 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAACTCCCAAAGAACGGAGACgttttgttgttatttgtattttGCTTCTGCTGACCGCCTTCAAAAATCCTCAATAAAGTCTCAACTCCATCGTCGCGGTAAATCCTCTCTGtgtcaagtccgccaacgtacataGTGAGCTTCTGAACAAACTGGTAGCAGCcgaaagctgtccatacagagGGGGAGTGctggtaacaacaacaacatggggTGCAGGACGAGACGAAAACGGGAACCAGTACCATATCCCTGCAACAGAATTTCAGctGGCTCTTGTGCTCTGGTGGCTCAGGCTTTGGCCAAAACATCTTTACAGAAGGAATATTTAATTGGTCTGGATTCTCTCTTCTTCTCATCATGCTGTCCCAGCCAGCCCTATCATGCTCTCTTTGCATGAGATGTCTCCCCCTTCGGGCTTCATAAATAAACCAGTACTGGAATGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000145376

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064398 lncRNA downstream 140933 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00064380 lncRNA downstream 1407876 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00064373 lncRNA downstream 1669294 46294361 ~ 46310011 (-) True XLOC_033123
TCONS_00064370 lncRNA downstream 1816720 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00065222 lncRNA downstream 2050130 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00065224 lncRNA upstream 853344 48914868 ~ 48949493 (-) False XLOC_033149
TCONS_00065225 lncRNA upstream 861063 48922587 ~ 48949515 (-) True XLOC_033149
TCONS_00065226 lncRNA upstream 1039355 49100879 ~ 49104192 (-) True XLOC_033152
TCONS_00064425 lncRNA upstream 1249384 49310908 ~ 49322485 (-) False XLOC_033155
TCONS_00065227 lncRNA upstream 1258485 49320009 ~ 49322485 (-) False XLOC_033155
TCONS_00064399 mRNA downstream 25476 47869397 ~ 47953829 (-) False XLOC_033140
TCONS_00064400 mRNA downstream 79900 47872403 ~ 47899405 (-) True XLOC_033140
TCONS_00064396 mRNA downstream 138840 47809755 ~ 47840465 (-) False XLOC_033139
TCONS_00064397 mRNA downstream 140824 47813887 ~ 47838481 (-) False XLOC_033139
TCONS_00064393 mRNA downstream 182316 47529881 ~ 47796989 (-) False XLOC_033137
TCONS_00064402 mRNA upstream 7171 48068695 ~ 48094342 (-) False XLOC_033142
TCONS_00064403 mRNA upstream 7246 48068770 ~ 48082525 (-) False XLOC_033142
TCONS_00064404 mRNA upstream 7246 48068770 ~ 48087152 (-) True XLOC_033142
TCONS_00064405 mRNA upstream 228601 48290125 ~ 48317562 (-) True XLOC_033143
TCONS_00064406 mRNA upstream 260726 48322250 ~ 48347724 (-) False XLOC_033144
TCONS_00064395 other downstream 376590 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 822889 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064371 other downstream 1727365 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other downstream 1751073 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064360 other downstream 3699091 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064408 other upstream 318721 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064412 other upstream 550510 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064417 other upstream 1054495 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064440 other upstream 1831964 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 2073795 50135319 ~ 50135437 (-) True XLOC_033171

Expression Profile

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