RNA id: TCONS_00065224


Basic Information

Item Value
RNA id TCONS_00065224
length 2287
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id XLOC_033149
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48914868 ~ 48949515 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACATGGTGCTCAGAGGATCAGCGATGAAACTCCCTGAACAAATGCGCACGAGGGGTGACCGCGTTCGGGTCGTGGgagcagcagtctcaggagagaaccttaaacttccctctccccagacacttcctccagttcCTCCGGGGGAACCAGAGGCATTCACAGGCAAGCTGAGATACATAGtacctccagcgtgtcctgggacTTCCTTGAGGCCTCCTTCTGGACACCGCTAAGTAAGTGAAGTCAGCCCAAACTGGAAGAGCAGCTGTGGAGAAGAGTCATGCGCTGAGAGGAGAAGCCTGGAATACTTATTATCTGCAAGAAAAtggaaggaaaaaaaagagcagTTTTACAAGGTAATCTGGttttgaaagaaaagaaaagcttcCATGTtcatttataaaccaagcaacaCTATTTTAATGATCTGTAGTCAGCCCCAAAGACACAAACTGCTCATCCCATTTACCTAAACCCATATATTTCTTTAACACATGCTTTGTATGCTTAACAGGAAATCAATTGTtccatttaaaacatttgatcACTGGATTTTTAAGAGTTCTGGAATTACATTACACACCCTTCTAAGTAAACAATAAAGGATTTTCCCCAAAGCAATGCTTTTATGTCTGGAACACAATAGATTTAAAGATAAATTTGTGCTTAATAGAGATATTAAGATTGTATTTTAAGGTTGAAattaataatgtgttttaatgCAGGTTGTGATTAAAATTTTTGCATAATTTAGCAAAAACAATTAGCAGAATAATGCACATCAATCACTTTTCTGATGCACATTATTGTGTTTTCACTGCAGTTTGTGCATTGTTTTACATTGGTTGTTATAGTTATTACACTAATACCAAAGCCATAAACCCAAACCCATTTGTTGCTTGGCAAAAACTAAGCCTAATTTGTCTTCCACATCATCACACATTTGCATAATAAGCTGATATTTAATACTGAAGCAGTTTTAACTTGTGCATAACTTATGCAGAATTTaatgtatgcaaaaaaaaaaaaaagcatgaagaCAATCAATCACTTTGCTGATCGCACATTAGTGCACATTTTCTGTTTGCACTGCAATTTATACACGTTGTTTTACATGGTTAAATATGGTAAACAAAAACTAATAccaaagttataataataataatgaaaccaTAATTTTACAATTCAATCACTATATAAGACTAAAACTAttacaaaatgacaaaaacacaacaaaccgacaaagaaaattaaaactgaacatgtaaatgtaaaaataaaaacatatgtaaACGATTCATAAAAACAGTATCTTAATGAtgttaaactattttttataaatgtttttagaatatctaaatattttatacaattcTTCAAATGTTGGTTCAAATAATGAATTTTGATAATGAATTTTCAAGTAatgatttttctaaataaatgttcCATTAACAATCCAGATAATTGCACATATCCccacaatatataaaaaacaaaatcaatgtacttatttgattaattaaataatttttttatatacaaaaattattttatataaatgttttctgATAATGTGCATTCATAATGTATTTTGTCTTTCTGGCAGATTTGAGTAAAATCTAGCTAAAATTAGAGAAAGTAATAAAGGTAAAGtattacaaaatgttttaatatatcatCCTAGATATCTGTGCATATATATATGAACAGCTAAACAGCTAAAAGTCCCCAATAGTACCCAGGTTAGTAAAGTCCAATAAAGGAGGTTAAGCTTTTTCATGTATGTCTCCTAAACTCTAGAATAGCCATCCTGATAATGTCACAGCCACACTCTCTTAGTTAAGAAACTAGAttaaaaacatattgttttagtaaagcatacacacaatgcattacatgcaggtgagtgggtttgactaATCACCTCTAGAACACGCTCCTCCTGCCTTAATGCAGCAGGCATTTTGTTAGaaatatttaaatgctttatATGGTTGTTTCTATGCTTGTTTATATAACTGCTATATTTTGAttcatagcattcatttttaCATTGATATTAAACATCTCTTGTTCAAATAAATTATGAACAGCAGctttgctaattattttctttgttctctatttccaTTTGGGAATACTCATCCGAGGTCTCTAgggatccaagacctgtgaagagatgatgatGCCAAGCATCAAGGACCTCAAGGACAACACaaatgaagagatgatgccaaccatagaggattttgaggacaacacatacaaTACAAAGAGATGATGTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064756 lncRNA downstream 853209 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00064401 lncRNA downstream 853344 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00065223 lncRNA downstream 863278 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064398 lncRNA downstream 1076496 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00064380 lncRNA downstream 2343439 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00065226 lncRNA upstream 151386 49100879 ~ 49104192 (-) True XLOC_033152
TCONS_00064425 lncRNA upstream 361415 49310908 ~ 49322485 (-) False XLOC_033155
TCONS_00065227 lncRNA upstream 370516 49320009 ~ 49322485 (-) False XLOC_033155
TCONS_00065228 lncRNA upstream 370516 49320009 ~ 49322490 (-) False XLOC_033155
TCONS_00064426 lncRNA upstream 370516 49320009 ~ 49322513 (-) False XLOC_033155
TCONS_00064410 mRNA downstream 441174 48425366 ~ 48473694 (-) False XLOC_033147
TCONS_00064411 mRNA downstream 441473 48426649 ~ 48473395 (-) True XLOC_033147
TCONS_00064409 mRNA downstream 496847 48382697 ~ 48418021 (-) True XLOC_033146
TCONS_00064406 mRNA downstream 567144 48322250 ~ 48347724 (-) False XLOC_033144
TCONS_00064407 mRNA downstream 567370 48347424 ~ 48347498 (-) True XLOC_033144
TCONS_00064413 mRNA upstream 111584 49061077 ~ 49063085 (-) True XLOC_033150
TCONS_00064414 mRNA upstream 113796 49063289 ~ 49078263 (-) False XLOC_033151
TCONS_00064415 mRNA upstream 121603 49071096 ~ 49078702 (-) True XLOC_033151
TCONS_00064416 mRNA upstream 157555 49107048 ~ 49159207 (-) False XLOC_033153
TCONS_00064418 mRNA upstream 219927 49169420 ~ 49215827 (-) False XLOC_033154
TCONS_00064412 other downstream 302718 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 533645 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 1312153 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 1758452 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064371 other downstream 2662928 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064417 other upstream 166526 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064440 other upstream 943995 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 1185826 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 1636009 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 1792822 50742315 ~ 50744929 (-) False XLOC_033178

Expression Profile

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