RNA id: TCONS_00064416


Basic Information

Item Value
RNA id TCONS_00064416
length 3445
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_033153
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49107048 ~ 49159207 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGATGTGTTTGGAAAACGCGGGAAAACAGCCCAATCCTCGCCCCGTCGTCCTGCTGGACCAATGGGCGGAGCTGGTCACGCTGAcggagtgaacacacacacacacacacacacactgctgctgctgctgctgttgacGGACTGCGAGTGGATTGTGTCTGAATAATAATATTCCTGACCTACATCTCTCACACAGGCCCGCACATTTGCGCAAACATTTTGGTCGACACGGCGAGCGCGCGCAACGAAACGGCAGGCAGGATGAGCGAAGTCCAGGGCTGCATGAAATGTGTCAAATACCTGCTGTTCGTCTTCAACTTCATATTCTGGCTTTCGGGCTCTCTGGTGTTGGCTGTGGGATTATGGTTGAGGTTTGACCCAGACACCACCAGCCTCTTATCCGAAAATGACGCACCTGAAAACTTCTTCATTGCGGTGTATATCCTGATCGGAGCAGGTGGGATCATGATGATAGTGGGCTTTTTCGGCTGTTTCGGGGCCGTGAGGGAGTCACAGTGTCTTCTGGGATCGTTCTTCGCTTGTCTCTTGTTGATCTTTGGTGCAGAAGTCGCTGCTGGAGTCTTTGGCTTTCTTAATAAAGATCAGATCATTAAAGAGGTCCAAAACTACTATGAATCAGCTACAAAGATGGAGAACGGAACTGTTATCACCTCCGCGTTTCACTCTGTGCTGGATTGCTGCGGGACCGAGTCTTCTCCGATTGAGACGTGCACTGAAGGCAATAAAGATTGTGTTCAGGCTATAGAAGATTTCTTCAATGAAAAGCTCTTCATAATTGGATATGTTGGCATTGGCATCGCTGGAGTTATGgtgATCGGCATGATCTTCAGCATGGTCTTATGCTGCGCTATCAGAAACAGCAGAGAGGTCATTTAGGACCATCTGGTTTTCCCGCTCGCCCACTTGGACTGTTTCAGAGCCCATCCGGATCTCCCATAAGGCCGTGCGGCGTTCAGCATTCTGTCTCCGATCCTTTCTGTCTTTCTGTTCTTGCATTGAAGATCAGCTCCACTGCATGGACGCCTGCTGTAACCACATTAACCAGTACTTTAATTTCCTCTTCCATTATTTATTACTGAAGCAGCACACGGGGAACATTCCACACAGCGCAGTACTGTTCTTTAATTTAAACCTGATCTCTCTTAAAGGGACACTTCACCCAAAATAACTCAAAATGGCTTCCAATATGTAGATCACTTTTTTTAGTTTAAACAAATCAAGGATATAGGCCTggagtgcccaaactcggtcccggATTGCCGGTgtgctgcaaagtttagtttcaattCCAATCAGACACGcatgaactagctaatcaagctctatctagagcacaggtgtcaaactcagttccaaagggccgcagctctgcagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtatgaaacctacaggtaagtgtgttggagaagggttggaactaaactgtgcagggcttcggccctccaagaattgagtttgacagcCCTGATctagactttctagaaacatccttatcggtgtgttgagacaagttggagttaaaatctactggacaacggccctccaggaccgagtttggacaccccctgATATAGGCCTAACAATATGAACACTTTCTTgactgattgtttttatttttagcattaaagTGCCATTTTATGAAGACGGTTTACCCTAAAATCATTTCTGTTCTACTAAAGATAAACCTCCATCTTGGCTAGTCTGTGGATAATGAAGTAAACTGCATTTTGAGGGAGGGTTTGCTCAATTTAGGGTTGAAATATGCCTTTAATATagagattttgtgtgtgtgtgtcctgagtCTTGAATTAATTTCAGACTTTTATTGTTTGGACTTTTACTCACTGATGTAAATACGCTTTTCACTGATCGCCCGCTTCTCCtcttcttttaattatttattgagtGAACTAGACCGTTTTCTGCGCTAATAGATGTTGATGGGTCATATGTTGATTGTGTTTCGCTGGTTATTAATAATTGGTTCTTGTAATTTTGCCTCATCATATATAGATACTGAATGAAGCCAAGGATTGAGCATGAGAAAGATGCCTCAAGTCAACTTGAACTCAGAGTAAAACACTTGATTTTGTaagttttgtaaatgtttttaatcaaAACGATGTTATTTATGATGTTGCAGATATCTAATCGGTGATTGgttaatattaataaagaaaaatatggcCTACAAGACGTATAAATAGCCATTTAAGACATTGCAAAAAGTAATGATACATGTAGTAGGActgcatattaaaataatcaaacaGTGCGATATTTTTGTTATTCTGCGttttatattgtgatatgaatacaatttcactacaTGAGCTGAATAAACATTTGGAAACAATTTcaaatttagattgattgggatgattctgtatatgagtgcataaattataataaacaatctacaagttcaataaagaaaaagaaactaattaaataaacagggtttttattgttttctgaggAGTGGAAATGTATTCAGGTgtacagtaactgaataatcagatgtaaaataatactgcatagtcttgaTTTCAATTGGATCTTTTTTCTGATTGTATTTATAGACttaatgcatgaaaatactcacaacacatgcaaatacagaaatgcactgcaaatagcaacGTGTCGGGAGACCCTTAAAAAAAAGGTAGAGATTGTCTGTTAGATTTGATGGAGatcactcccactgcagaatcatcacaattgaacattataaattctttcctaATAGAGATTCAGTCTGGTCAAGttgtatttatatcgcaaaatcaaaaaatatcacaatgtcagatttttccaatatcatgcagccctaatcgTAACAATTGCAGCGCTGAAAATAAAAAGCTGCTTATAGAAAACTGAATATTCAGACTTCAAAATATGTTggtccatcaaaaaaaaaaaaaagttgattaatTTTGACTCAAGCATCGCCCTTGTAATCTTTTTGTTTGGTGTGCAAATCGGGGACCTTGTTTATAAAATAGTGCATAAACTGCAGCTCATGTGTGAAGCTTTGACTCGAGAGCGGCCAGACGAGGCTCCTGGGTAATGCGTGTTATTTTCCACAAGTGGCTGATTTTGCATCTGTTAAAGTTGAAGCAGCAGTTTATTACTGGGAGATCAAACATATCTTACACTGTTTTTCCCTTTTTATATTTTGCTTCTGTGAGTTTTGAGTAATGTTTGACCCACTAGTAGTCATGTGCCTTTATAACTGACAAAAGCCCCGTTATAAACATGTTTGCAGTTTTGGGTTCATGCTTATTTTTATAGCACCGCGTTGCATGTAAATAGCTTTGAAATGAGGAAATATGGTCAAACAATAAAACagctcacacaaa

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-511 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human TSPAN2 (tetraspanin 2).

Ensembl:

ensembl_id ENSDART00000041942

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065226 lncRNA downstream 2856 49100879 ~ 49104192 (-) True XLOC_033152
TCONS_00065225 lncRNA downstream 157533 48922587 ~ 48949515 (-) True XLOC_033149
TCONS_00065224 lncRNA downstream 157555 48914868 ~ 48949493 (-) False XLOC_033149
TCONS_00064756 lncRNA downstream 1045389 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00064401 lncRNA downstream 1045524 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00064425 lncRNA upstream 151701 49310908 ~ 49322485 (-) False XLOC_033155
TCONS_00065227 lncRNA upstream 160802 49320009 ~ 49322485 (-) False XLOC_033155
TCONS_00065228 lncRNA upstream 160802 49320009 ~ 49322490 (-) False XLOC_033155
TCONS_00064426 lncRNA upstream 160802 49320009 ~ 49322513 (-) False XLOC_033155
TCONS_00065229 lncRNA upstream 160802 49320009 ~ 49322524 (-) False XLOC_033155
TCONS_00064415 mRNA downstream 28346 49071096 ~ 49078702 (-) True XLOC_033151
TCONS_00064414 mRNA downstream 28785 49063289 ~ 49078263 (-) False XLOC_033151
TCONS_00064413 mRNA downstream 43963 49061077 ~ 49063085 (-) True XLOC_033150
TCONS_00064410 mRNA downstream 633354 48425366 ~ 48473694 (-) False XLOC_033147
TCONS_00064411 mRNA downstream 633653 48426649 ~ 48473395 (-) True XLOC_033147
TCONS_00064418 mRNA upstream 10213 49169420 ~ 49215827 (-) False XLOC_033154
TCONS_00064419 mRNA upstream 10568 49169775 ~ 49173891 (-) False XLOC_033154
TCONS_00064423 mRNA upstream 10568 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064422 mRNA upstream 10568 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064421 mRNA upstream 10568 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064412 other downstream 494898 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 725825 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 1504333 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 1950632 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064372 other downstream 2878816 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064440 other upstream 734281 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 976112 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 1426295 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 1583108 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 1584953 50744160 ~ 50745255 (-) False XLOC_033178

Expression Profile

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