RNA id: TCONS_00065229


Basic Information

Item Value
RNA id TCONS_00065229
length 516
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_033155
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49310908 ~ 49322532 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGTCAGCCGGGGCACCTGTTTGCCAGTTCAATAGTTTGCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGcatttttttttcagtgtacacaaCGATAAGTGTGGCCAACTATTTCCAAGAGGAGGGGAGACTGCGGAGACTGCAGACTTTGATCCAGACAGGTCTACGGCCTAAGCAGTTTTACGTCCCAGGAAGTTTTACACCCCTGTTGTCCCTGATGCGTCCAGTAGAGGGAGCATGAAGAATTTGATGCAAGGATTCTGCTTCACTTTAAGAAAACTGCCAATCTAGTGATATTgttgtcaataaataaatgtaaaaaaaatctaatgttgtCTGGCTTTTTCATTGTCAGGTTGCTAAATGGTCCTTGGAATTTTAGAAAG

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048864 stem cell development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065226 lncRNA downstream 215817 49100879 ~ 49104192 (-) True XLOC_033152
TCONS_00065225 lncRNA downstream 370494 48922587 ~ 48949515 (-) True XLOC_033149
TCONS_00065224 lncRNA downstream 370516 48914868 ~ 48949493 (-) False XLOC_033149
TCONS_00064756 lncRNA downstream 1258350 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00064401 lncRNA downstream 1258485 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00065231 lncRNA upstream 437831 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065232 lncRNA upstream 441142 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00064441 lncRNA upstream 595730 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA upstream 597412 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065233 lncRNA upstream 1037133 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00064418 mRNA downstream 104182 49169420 ~ 49215827 (-) False XLOC_033154
TCONS_00064423 mRNA downstream 104219 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064422 mRNA downstream 104219 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064421 mRNA downstream 104219 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064420 mRNA downstream 104219 49169775 ~ 49215790 (-) False XLOC_033154
TCONS_00064427 mRNA upstream 186281 49508805 ~ 49510553 (-) True XLOC_033156
TCONS_00064428 mRNA upstream 197600 49520124 ~ 49526510 (-) True XLOC_033157
TCONS_00064429 mRNA upstream 206490 49529014 ~ 49537646 (-) True XLOC_033158
TCONS_00064430 mRNA upstream 218754 49541278 ~ 49547680 (-) True XLOC_033159
TCONS_00064431 mRNA upstream 262937 49585461 ~ 49655235 (-) True XLOC_033160
TCONS_00064417 other downstream 160915 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 707859 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 938786 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 1717294 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 2163593 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064440 other upstream 570964 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 812795 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 1262978 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 1419791 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 1421636 50744160 ~ 50745255 (-) False XLOC_033178

Expression Profile

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