RNA id: TCONS_00064435


Basic Information

Item Value
RNA id TCONS_00064435
length 3207
RNA type mRNA
GC content 0.37
exon number 3
gene id XLOC_033163
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49760355 ~ 49771639 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCAACTAGTTAGCAGCTGTTATCCACGTGAGCGGATGGGATGGCAGATCAAAGTCCAGCCAAAAAAGTAAAATGTCAAGTCAAGGGTTTCCTTTCTGAAGTGAGCCCTATAAAAAACACAAAGGCTCCATATTTTGATGCCGTTCTTCAACATGAAGGTGAATGCAGCAAAATTGTGTCCTTTAGACCAGAGGATCACATGCACTTCCACAATGCTGAAAGCACGCGGAGTCTGGTGACACTAGAGGATGTCGTATTACAGCCGTCCACCAAGTCCAGCAGAAAAATGAACGTGTTTTACACACACCGCTCCAAAATGTCCTGCGTTCGCGACCTGAGAGAAGCATTCAAACACATCCCGTCTGCTGGACCACGAGATATACAGGTGTCTGAACTTCTAAAACGGGATACAAAACCAAATAAGGTCAATATTAATGTGAAGATCATCCAGGAGGTGTGCAAAGGGAACAAAGTTGTCTGGGATGGAAGCTACCTTCCTAAAACTGAGTATATAGTAGCGGACACTACAGGATCCATCAGTCTGACGGTCTGGCGTGAACACAACATTACTGTCGGAGACTGGTACACCATCACTAATGTCTCTGCGAAAGAATTCAGAGGCAAAGCAACTCTATCGACCACCAGAAACACACAGATCCTCAACATACCATCTCGAGGGACAGCGGCTGCTGCTGAAGTGCCGACGCAGACTATAAAATGTGACATCATTGGTGCAAACATTGAAAGTCTTATCATTTGTCCACATTTACATGAACTCAAGAGTGTGACATCATCAAAATCCACTGTGTATTGTTTTTCATGCAACACGTATTACAAAACCACTGCCATTGTCACAAAGTTTAGTGGTCATCTGAATCTTAAAGCAGAATCGGGGAAGGTTGTGAGGGCCAGGATTGAAGATGAGCTGATCAGATCAGTGGTCAGAGTGGAGGACGCTGCGTCTCCACAGGACATCATTCAGAGATTAATTGAGCTGCCGCCCATGCAGATTACCATCCGTGAAAACAACATTGTGAAGATTGAAGATGTTCCTAAAAACACTGAAATCAAGGCTGAAGCTGAAGCAGAGCTGCCTGTTAAAATGGAGCCTGTGGAAGAATCTGACGACTTCTGTTCACCACCAGACCATGGGGTTTTATTCAGTTCACAATCCAGAAAAAGACCATTTACTGACTGAATCTGATCATCGAAGATCACTTAAACTTAAAAAAGCTAAACTCAACTTAAAAAGCATTTTAGTTACAAGTACAAGATGCAAAAACATATCAATATatgcagcatttttttaaatgaaaattaaccatagttttatatatatatataatatatatatatatatatatatatatataaaactttaacccccggtttcacaaacaaggtttaaggctagtcaggattaaattgcatgtttgagctgtctcaacttaaaaataacttgcggtgagatgtcttaaaatatgtcagtgtaattttttttgtctccaggtgcctaccagtaatatttttttaaggccatttttataaatgagTCTTAAATAACCttatttaactaaggcctagtcctggcttaatctaagtcatgtttgtgaaactgggcctaaATATGATAAAACCATAGCAGGCTAAGAAGTCGCACACAAAATATCGTTTGGCTACACTAGCCATAGTTTAACTATGATATTAGCTGTGGTTTTACTATTAGTAGTCAGTGCACGCATCCAAAAAGTCATGGTGAATgcaatttttatataataaacctGTGGATACTTTTCATAAGGGTTGGCAAAGCATATGCTAACTAGAGTAGCCTAATGCTTTTCTAAATTAGTTACCACACATTACATTAAAGCACAAGGCCCGCTATACTTTTATGGTTAGTGTGTACACAAAGGACACATTCCTGAATTATCTTCTAGAAGAGTGACCTGGTGCTTTGCTTTTAATGTGAACTTATGATGGATATAAACTACAAATATGTCAGTTTTGGAGAAAAGTTAATGACATACGTCTGATGATATTTGTCTTAACGTTAATTTAATAACTTTGATGTGTGTTTCTTATGATAAAAAGATTCCTGTTAAAAAAAAGCCAAAGAAGAACTGTgcattttacatttatacaaatacacgtatttatttgttactttaatATGTTATAAtgataaaaagtaaatatttaacaatgttGAGGAGTAGGCTACAGTCTTACCGTTTTAACCAGCGTTTCCAGGGCAGCCATTGCGAAAGTGGCCTTCGCTATTTCTTCGCTATTTCTTCTGCCATTCAGCGAATGGAGTTATTCGCTGAAAACAGAGACAGAATGGCCTTAAAAGTTCATCTGATTGAGCTCAAATTGTTTTTATGcggtaaaaaaatgttttttctttcctGTTGACAGCAAAAGGGCGTCTCGAAAATCTATTTTATACAGTCTATGCTCAAAATTAATGGTGAATGACGACGCTAGCATTAACGTTACACCTGcagattacattaaaaataaatcaaacgtGTTATTTGTTAGCCGAACACACATTACATAAAATAGTTTTGATAATATATCGAATATTTTTTGTTGCTAAAGCTATAAACTACGAGTTCTCACAGCCCTGTGGGGAATTATTAATGTAAATGAGCAGTATGTCAGATTGTCCATTAAAATAAGCACAAAAAAACAACTTTAACAATGTTATTTGAAGACCTATGTATGTGAGCCTACTTACCGCATCTCAAATTCTCAAAAGAATATTAAAATCCAGAGAAATTTGCCTTTTAAACACATGACAGACCGTCGTCTCGCCATCACTAGTCTATTACGTCACAAACTCTCGATTTTAGGTTTTGCTGTGAAAAAACAGGATCGCTGATTCATACTGATTGCTTGTCGAATGTTCTGATATGTGCCAATGTTTTACCATAGTAGTTGTATATTGCTGATAAATTATCAATTTCAGATGACTTACAGCAAATAAGACAAACATGAgtctaaaacaaattaaacaaacccATTTTTAAGACGCAGCTGTTAATCAGTATTTGTGCATGTCAGTGTTGTGATTTTAAGGTTTACATTAtgttgtggtttatttataactTATTGTGATGTATGTTTCTTCTCTTTGAATTAAAACcctctaaatcagtggttctcaaacgtttttcatcaagtaccacctcagaaa

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-110411-157 Predicted to enable DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and response to ionizing radiation. Predicted to be part of SOSS complex.

Ensembl:

ensembl_id ENSDART00000148853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065230 lncRNA downstream 438697 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065229 lncRNA downstream 438705 49320009 ~ 49322524 (-) False XLOC_033155
TCONS_00064426 lncRNA downstream 438716 49320009 ~ 49322513 (-) False XLOC_033155
TCONS_00065228 lncRNA downstream 438739 49320009 ~ 49322490 (-) False XLOC_033155
TCONS_00065227 lncRNA downstream 438744 49320009 ~ 49322485 (-) False XLOC_033155
TCONS_00064441 lncRNA upstream 149154 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA upstream 150836 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065233 lncRNA upstream 590557 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00065234 lncRNA upstream 688868 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 707113 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00064434 mRNA downstream 87753 49650876 ~ 49673476 (-) True XLOC_033162
TCONS_00064433 mRNA downstream 105350 49650170 ~ 49655879 (-) False XLOC_033162
TCONS_00064431 mRNA downstream 105994 49585461 ~ 49655235 (-) True XLOC_033160
TCONS_00064432 mRNA downstream 126442 49628431 ~ 49634787 (-) True XLOC_033161
TCONS_00064430 mRNA downstream 213549 49541278 ~ 49547680 (-) True XLOC_033159
TCONS_00064436 mRNA upstream 12784 49781884 ~ 49801173 (-) True XLOC_033164
TCONS_00064437 mRNA upstream 42731 49811831 ~ 49861506 (-) False XLOC_033165
TCONS_00064438 mRNA upstream 85160 49854260 ~ 49873020 (-) True XLOC_033165
TCONS_00064439 mRNA upstream 124388 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064443 mRNA upstream 206810 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064417 other downstream 602135 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1149079 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1380006 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 2158514 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 2604813 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064440 other upstream 124388 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 366219 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 816402 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 973215 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 975060 50744160 ~ 50745255 (-) False XLOC_033178

Expression Profile

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