RNA id: TCONS_00064440


Basic Information

Item Value
RNA id TCONS_00064440
length 958
RNA type processed_transcript
GC content 0.45
exon number 3
gene id XLOC_033166
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49893488 ~ 49902140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATGGAGAGCTGTTTTATTTACCGCCAGCTTCCTATAATAATACCGTTAGATCAATTTAAGCAAACTATCGCCTTGTGTATATAAAAACCTCACGGGCGATTTCACATCATAGCCAAAAGAGCGTGTACTTAGTAAAAGTATGATTTAGCTAATTAACACTAGTCCGTTAAGTgtgttatttcttgtttattgGTTTAATACGTTCCACAGAGCAAATACATGTATACTTTGTACAAGGCTAAACAAGCaaacacggtaacctgctgtggcTAACTGCACCGAGTTAACGGGATAATCTAGACGTTAACGTTACCAGGGTAACCGAGTTGACCGCTCACCTCTTTTGTTCTTCGTGCCGTTTTTCTTGGCCGTGACGAGCTCCTGCTCGATCTTCTTCTCCAGAAACTCCTGCTTCTTGGTCAACATTTCTTCAGTTTCTCGCAGTCGCTGGATTGCCTCCTGAGGGCTTGCAGATTTACCCCCTTTGCCACCGCTACCAAACATCTTCCCGAACAAAGACATGTTTCCCGTGGGTCGACAGCAAGGGCTGACAGGACGGTGGTTTTTGACACTAGGGTAGACTGGTCACCTCGGTGTGGCTTCTGGCTGTCACTGAACCCAACAGGCTTGTTGTTGTTTTCTGCTTCCTCTTCTCTAACCCAGGCCGCATGACATCATCACGTCACGGGAAACTACATCAGGTACTCTGCGATCTGCGCAAGGGTCGTGCGGGCTGCACTGAAGCCGCAGATCAAAGCTGAGGCGATTAAAAACGCCGAGTCCAATGTGAGGGTCATCAAAGCCAAGACCACATAATGATGAGCTGTAATTACATCCTGCAATCCCCACGTCTCCACACACATTCTCTGTTGGATTTTCAAGATCTGCAgttatgatgaatgaatgaaaatagctGTTCTTTTGATAATAAATTATGAAGAGTCTCAAACTAAAA

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-22 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Orthologous to several human genes including ATP5F1E (ATP synthase F1 subunit epsilon).

Ensembl:

ensembl_id ENSDART00000149909

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065232 lncRNA downstream 121849 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 130548 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065230 lncRNA downstream 570956 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065229 lncRNA downstream 570964 49320009 ~ 49322524 (-) False XLOC_033155
TCONS_00064426 lncRNA downstream 570975 49320009 ~ 49322513 (-) False XLOC_033155
TCONS_00064441 lncRNA upstream 16114 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA upstream 17796 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065233 lncRNA upstream 457517 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00065234 lncRNA upstream 555828 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 574073 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00064438 mRNA downstream 20468 49854260 ~ 49873020 (-) True XLOC_033165
TCONS_00064437 mRNA downstream 31982 49811831 ~ 49861506 (-) False XLOC_033165
TCONS_00064436 mRNA downstream 92315 49781884 ~ 49801173 (-) True XLOC_033164
TCONS_00064435 mRNA downstream 124388 49761229 ~ 49769100 (-) False XLOC_033163
TCONS_00064434 mRNA downstream 220012 49650876 ~ 49673476 (-) True XLOC_033162
TCONS_00064443 mRNA upstream 73770 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064444 mRNA upstream 119270 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA upstream 120010 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA upstream 125069 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064448 mRNA upstream 499480 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064417 other downstream 734394 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1281338 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1512265 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 2290773 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 2737072 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064447 other upstream 233179 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 683362 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 840175 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 842020 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 842025 50744165 ~ 50747545 (-) True XLOC_033178

Expression Profile

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