RNA id: TCONS_00064442


Basic Information

Item Value
RNA id TCONS_00064442
length 807
lncRNA type antisense
GC content 0.40
exon number 2
gene id XLOC_033168
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49919936 ~ 49921857 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacaagACATGATTTTGAATTGCCAAAAGCCCCAGATATGcctgccaaatatctcacggttGTCAGTAGTGGCACTGATGGTCGGTACGGGCCCAGTGACAACATTtagGTTTTTCAGGTTTTGTCACAGACAAAAGTGAGGAGCGGGGTTTGGGGAGTGGGGGAGAGAGGGTGATTGGGGGCCCCCAATAGTatcattggcgattctctcagatcgcatctttgataATACACACTGTGTGATAGTTTTTCACGTGAACGAGcgccgatttgcctgtgatttcaggcgtTTGTCAGCGAGTCAAAAATtgaggctaaaatcatgcagtctgaactctgcttTAATAATCGaaacacaaaaaacagaaacgtTAAATAGTCAAATGATAGAAAGAAAATAGAAACAAACGTCCAGAGAAATGTTCATTTTGGCAAAACTTTAATGTAGGTGTGAGGTTGAAAGGCAGAGGAGGACAAAATAAACGAGAGTGTCAAAAAGACAAACGAAGGATACGATTGAAACATTGGGAGTCTGATAAATAAACTCGGTTACGTGTTCAGCGCTTATATACCCCTCTAAAATATTCTATACTCAAATGCTTTAATAAACTCTTTTAGGAACggaaaaatgaattaaaaccacTTCACCAGAACATAATAATAGATCACTCTGTAAAATAAAGCATGATATTAACTTAATCTGTGCCGTCTGTCCTTATACAAACAGTCCTGAACGCATTCGcaccacaaaaataaaacaaatatctgAAATCTACAACAAACCCCCTCTAACACAACACCCATTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156067

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065232 lncRNA downstream 148297 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 156996 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065230 lncRNA downstream 597404 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065229 lncRNA downstream 597412 49320009 ~ 49322524 (-) False XLOC_033155
TCONS_00064426 lncRNA downstream 597423 49320009 ~ 49322513 (-) False XLOC_033155
TCONS_00065233 lncRNA upstream 437800 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00065234 lncRNA upstream 536111 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 554356 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065235 lncRNA upstream 558282 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00065236 lncRNA upstream 558282 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00064439 mRNA downstream 21055 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064438 mRNA downstream 46916 49854260 ~ 49873020 (-) True XLOC_033165
TCONS_00064437 mRNA downstream 58430 49811831 ~ 49861506 (-) False XLOC_033165
TCONS_00064436 mRNA downstream 118763 49781884 ~ 49801173 (-) True XLOC_033164
TCONS_00064435 mRNA downstream 150836 49761229 ~ 49769100 (-) False XLOC_033163
TCONS_00064443 mRNA upstream 54053 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064444 mRNA upstream 99553 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA upstream 100293 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA upstream 105352 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064448 mRNA upstream 479763 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064440 other downstream 17796 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 760842 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1307786 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1538713 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 2317221 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064447 other upstream 213462 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 663645 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 820458 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 822303 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 822308 50744165 ~ 50747545 (-) True XLOC_033178

Expression Profile

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