RNA id: TCONS_00064443


Basic Information

Item Value
RNA id TCONS_00064443
length 728
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_033169
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49975910 ~ 49983329 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAATATCTCCAGCCAGCTTCACAAAGGGAAAACTGGGGGCCTCAGTACTCACAAGGACAGGGTGAAGTGTTAATATGAGTCCGTCATTGTGGCTGTGCTGTGTGCTGCTCTGTTTAGTCTGCTGTGTCACggtgcacacacacatgccaatGGAGGAACAGCACAGCTCCAACCAAAGCAACAGCAACTTACTAGCAAACAACCAAACAGATGCACCTCCTGTGCTCATAATCGGGCTTTCAAAAACACCCAAGAAGAGCAAGAAATCAGAAAAGAAGCCAAAAAAGAAATTCCCCAATAAAGTGAAGAGACCCCCGCCTCCGCCGAACTGTGTGCCCCTGTGGGCGAGCTGCAAGAGCCCGAACGCGGTGTGCTGCGATCAGTGCGCTTTCTGCCACTGCCGCCTGCTCAAAACAGTCTGCTACTGCCGCATGGGATACCCCAAATGCTGAGGAGGACCACCAGACTCACCCCATCCTGTTTATGGAGCCCTGCGGGATTATGACCGGCGATAATCTCTCGCACtgcatcattatttttataacCGCGGTCAGATTTTCTCGGAGTTTTTCCTGACCAGATAAACCTGAGGCGCACGGCGGGAAAACACATGCAGACACCTGGGTACTTAAAATCACCTTATGATTATTACTTATATTATGGGTAATATTATAGGAAGAATATTCTTGTTTATACGGTGACTTTTTTTGGTTGTATGCACTTTA

Function

GO:

id name namespace
GO:0032438 melanosome organization biological_process
GO:0048023 positive regulation of melanin biosynthetic process biological_process
GO:0043473 pigmentation biological_process
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0031779 melanocortin receptor binding molecular_function
GO:0005102 signaling receptor binding molecular_function
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060215-1 Predicted to enable melanocortin receptor binding activity and neuropeptide hormone activity. Acts upstream of or within pigmentation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including fat cell; integument; liver; opercle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human ASIP (agouti signaling protein).

Ensembl:

ensembl_id ENSDART00000113083

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064441 lncRNA downstream 49593 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 54053 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 204271 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 212970 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065230 lncRNA downstream 653378 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065233 lncRNA upstream 376328 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00065234 lncRNA upstream 474639 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 492884 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065235 lncRNA upstream 496810 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00065236 lncRNA upstream 496810 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00064439 mRNA downstream 77029 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064438 mRNA downstream 102890 49854260 ~ 49873020 (-) True XLOC_033165
TCONS_00064437 mRNA downstream 114404 49811831 ~ 49861506 (-) False XLOC_033165
TCONS_00064436 mRNA downstream 174737 49781884 ~ 49801173 (-) True XLOC_033164
TCONS_00064435 mRNA downstream 206810 49761229 ~ 49769100 (-) False XLOC_033163
TCONS_00064444 mRNA upstream 38081 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA upstream 38821 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA upstream 43880 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064448 mRNA upstream 418291 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064449 mRNA upstream 597611 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064440 other downstream 73770 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 816816 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1363760 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1594687 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 2373195 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064447 other upstream 151990 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 602173 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 758986 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 760831 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 760836 50744165 ~ 50747545 (-) True XLOC_033178

Expression Profile

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