RNA id: TCONS_00064444


Basic Information

Item Value
RNA id TCONS_00064444
length 2891
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_033170
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50021410 ~ 50204262 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGTTTTAATTCTGTTCTCCCTCAAACAAAAAAGTTATGGACTCACcttatgttattaaaaaaaacagaaacaatcacAGAAATTCAACaagtataattaaaatattagaaaCCATTAACATTTAGGCTAACAATTAAAGCCagtaaattttaatgtttttttctagtGTGCTTTGGAGCAGATTCCATTAGGATTTTGCAGATATAACGTGACACCAATAGAAAGAAACAAATTACCAGTAGAAACCCATGGGAACCGTTACAGTTTCCATTCAAACCAATACAACTCCCATTATAGCATTAAACCCATTACCAATTCAGTGAGGGTTTCTATTGTTTATTTCACCCGGAACGACCTCTTAGTTTTATGTGAGTAAATATCACTTCAGTGCTATTCTTCAAAACACTCCCCCAATTACTTACATATAAAACTTTGTAATTAGCCAACGACCGAGTTTAATTGCTTACTTAATACCTTTATGTAGGCTAGAGATATCACGCGTCTCCCCCTGCGCAGTCGCAATGGTTTGCTCCACACCAGCGCTGTTTATACTGTTGAAACGCAGCTTTCCACAGTCACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGTGGTTATGATTTTGACTATGATTACTACAGAGATGACTTCTATGACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGGCAAGAACTCAGAGCTGGGACAGTGGATTCCTGGATCACGCAGGGAGTTGGAAAACACTGTCGACTGGAAACTTTTTTAATACCACAGACTCAGCGGGAAGACACTGAAACCAACAGGCGCCGTCAAAACTCCAGCATCAGCTGTCAATGAGACGGACAACCAAACTAGTTGCTTGCTAGGAGATTGTGTGGGTGACGTCCTACGAAACCAGGAATCCATAACAAAACGGTCACAGTTCCTGAGAGCAACAGCTTCAACACACACAACAACTCAAGTGGATCCATTTCAGACAGTCTGCATTCACAGTCAATCAACATTGCATCTTTTCTACACATTTGAGGCGCCTCATATATGTAAATACCCTCGTTCCTGTTTCTGTTCCTCCTTCCTTCCTGTCTGTTTGTGCTTTTCCAGAAatgttttttggttttatttatacgCCAGTCGGAAATAAGAAGGGTTGGCTATTTTTAATTACATGTGCATATTTATTTCTGCTTGCACTTTCGAGACTGCAAGAGATATTTACAGATGTAAATAAAACTATGACTTGTGAAGCATCGTTCTCTGTGTTTAAATGAAGTTTAGACTAATCCTTGGTGCTTTGTATAATACTTTGCTTTTTGTAAGACGAGCGATTTATTCTGACTGTGTCGGGTTTGccactaagaggattatagaagATGCTACTTCTTGAAATATGAATAACTCTTGTTGAGCTCTGGACGAGAGAGACAGTTGCTATGTTTCCATCTTAAAATgccaattaaatttatgcgcaaaacagacatattgcataaaagacgtgcgaataaagcagcgtttgcAACCAACGACTCAAAGAGagtaaaatcgtcacttcctgattaactggcgccaaatactaacagtaaaaacagaattttctgcaataggagaagctgcgtcaatgttctctttatttaataaataactttcaCCTCAGAAGAAGATGGCAACACGCTAGACGAAAGCGAAGAAAGCTGTTGGGCCCATAATGGTTTTTCTGGGGGACCAAAGAAGCAGCCCTGTTGATTGTAAGGAGTATGAATGGATCTTGGATGTACCACATCTggcattttgtcatgatcacataaCCTACCCGTGTCAGTTGTGCTGCTTCACTTACGTTTATGAATTATCTTgtagggcatcatgggatagcgcagcgtgcatcgGATGCGCTCTTCAGAATCTCGTTGGAAGCAGTAGATCATCCAGGTACTTTGcgcatactgttttttgaattctGTCTGCGTCTGAAATCGCATATTCCAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041010-127 Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

Ensembl:

ensembl_id ENSDART00000163648

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064441 lncRNA downstream 95093 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 99553 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 249771 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 258470 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065230 lncRNA downstream 698878 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065233 lncRNA upstream 155395 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00065234 lncRNA upstream 253706 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 271951 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065235 lncRNA upstream 275877 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00065236 lncRNA upstream 275877 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00064443 mRNA downstream 38081 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064439 mRNA downstream 122529 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064438 mRNA downstream 148390 49854260 ~ 49873020 (-) True XLOC_033165
TCONS_00064437 mRNA downstream 159904 49811831 ~ 49861506 (-) False XLOC_033165
TCONS_00064436 mRNA downstream 220237 49781884 ~ 49801173 (-) True XLOC_033164
TCONS_00064448 mRNA upstream 197358 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064449 mRNA upstream 376678 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064451 mRNA upstream 491119 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064452 mRNA upstream 509538 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 510096 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064440 other downstream 119270 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 862316 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1409260 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1640187 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 2418695 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064450 other upstream 381240 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 538053 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 539898 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 539903 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 550239 50754501 ~ 50756448 (-) True XLOC_033179

Expression Profile

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