RNA id: TCONS_00065233


Basic Information

Item Value
RNA id TCONS_00065233
length 327
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_033172
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50359657 ~ 50380212 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGATTTCGATTCAAGCTCCGAACCACTGATGCAAACCAAAAGATTCACTGTTATTTTAATGCGCTTATACTCTGCAAAGGACTTGCCATACCATAATGGGCTAACTATCTAACCAATGCACCTGCTAGATCAAACTGTGGAATGGATGATTAAATTACTGCACCTGTCTGAAAGGTGCCCGGAGCAGGCCCAGCACATCCCACCATAATTCATCTCAACTCCAGTAACAACTGACACCCACATCAGCGCCAGGAATTTTGATTTGGTTCAGCCTGCTCCGTTGTAAACTGGACATCAAATGTTCATCTGTATGACATCAGCATAAG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064441 lncRNA downstream 433340 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 437800 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 588018 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 596717 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065230 lncRNA downstream 1037125 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065234 lncRNA upstream 77756 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 96001 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065235 lncRNA upstream 99927 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00065236 lncRNA upstream 99927 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065237 lncRNA upstream 115410 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00064444 mRNA downstream 155395 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA downstream 155975 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA downstream 155975 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064443 mRNA downstream 376328 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064439 mRNA downstream 460776 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064448 mRNA upstream 21408 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064449 mRNA upstream 200728 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064451 mRNA upstream 315169 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064452 mRNA upstream 333588 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 334146 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064447 other downstream 224220 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 457517 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1200563 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1747507 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1978434 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064450 other upstream 205290 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 362103 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 363948 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 363953 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 374289 50754501 ~ 50756448 (-) True XLOC_033179

Expression Profile

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