RNA id: TCONS_00065234


Basic Information

Item Value
RNA id TCONS_00065234
length 955
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_033174
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50457968 ~ 50505438 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTCAGTGTGCCCTgacctcagtgtgtgtgtgtgttcgtcctAGTGCTTTAGGCCGTTGTGAATCTGACAGAGGCGTTCACCTCCAGGAGCTCAGATCTGCACCCCCGCAGTGGAGGAAGCGGCCCCGAGGAAAGGCCTCATGCTGGAGGCTCAGGGGCCCTGCGGCTCCCCAACAATCACACTTCTTGGAAGATTCCTGGAAGCTTCACTGATTAACCATTCATCTTTTTTTCACGACAGCCAGCATGAACGTCACATTCACTATGAAAAAGAGATCAGACCTGAGGCCGTTCCCAGTGTCACTGGTGGGCTGAGGGTTAAAGATGAAACTCTCTGGAATCTCTGTCAGGACGTTTTACACCTTCCTATGCTGAAGAGCCTCAGGATGCCAGCATGACATGCACTGACATGTGTGTGCTCATCCACAGATGATGCAAGGTAACACTTACCACATTAATGCTGGCAATTAAATCAAGAAGAGAAAAAACTATCTGAAATCCTTAAGAAATCTAGAGATAGGGGCGGcacggtggatcagtggttagcactgttgcctcacagcaagaaggccgctacttcgagtctcagctgggtcagttggcatttctgtgtggagtttgcatgttctccctgtgttggtgtgggtgctctggtttctctcacagtccaaacacatgcgctataggtgaattgaataagctaaattggctgttgtgtatgagcatgaatgtgagagtgtatgggtgtttcccagtgatgggttgcagctggaaggctgtgtaaaacatatgctggataagttggtggttcattccgctgtggagacccctgatgaatcaagggactaagctgaaggaaagtgaaagaGATCATGCAGAATGTGTACtttagtactaataaacagccttAATAATGTTAATGATTGGCAGGTAATAAACTAAAGTGTCACGG

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0051179 localization biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065233 lncRNA downstream 77756 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00064441 lncRNA downstream 531651 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 536111 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 686329 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 695028 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065235 lncRNA upstream 3650 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00065236 lncRNA upstream 3650 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065237 lncRNA upstream 19133 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065238 lncRNA upstream 1052274 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065239 lncRNA upstream 1550002 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064448 mRNA downstream 53236 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064444 mRNA downstream 253706 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA downstream 254286 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA downstream 254286 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064443 mRNA downstream 474639 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064449 mRNA upstream 104451 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064451 mRNA upstream 218892 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064452 mRNA upstream 237311 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 237869 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064458 mRNA upstream 533492 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064447 other downstream 322531 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 555828 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1298874 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1845818 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 2076745 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064450 other upstream 109013 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 265826 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 267671 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 267676 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 278012 50754501 ~ 50756448 (-) True XLOC_033179

Expression Profile

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