RNA id: TCONS_00065235



Basic Information


Item Value
RNA id TCONS_00065235
length 1339
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id XLOC_033174
representative False

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50457968 ~ 50505438 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGCTTCCATCTTCAGGCTTGTTGGTCATTCGCAGACCACACATGCTGGAAGGACGCTGGAATTACAGCAAAACAAGGGCAGAGCGGCCTGTCTCCTGACAATAACAAACAATGACCAGCACTTTCATAACATAAAGAGATCCTGTGATATTCTGCTAAACATCTCCTATTGTGTCCTGCAGAGGAAATAAGGCCAAATGGCATTATGCCTGAGAGGGAAGGGGGCTGAACCACCACAACAATTCCCCTGAAGAGGCGCTGGTCAGACCCCTGCAGATCTGGCTGACAGAGCGAGACCTCCGGCTGTCATGAGCCATTAACCTGCCAGAGACTCCAGGGAACACACACTCTGATGGAGGGGCGCACAAAAAAACAGGTTTCTTTAGCTGAGAGCCAATGGTTGAGTTGTATTTGTGTCATTAAAATTAAACagaacttattttaaatgaacataattaataatatgcaAGCAAAGCATTTCTCTAGACAAATTTCCATCATACTAAACATTTCCAACACACAGTATTGTGCAATAGTCTTAACAGTTTTTGTTGGTTTAAAACTTTACAAAACTGTATCCATAATCTTtttcagtctctttattaaaataaacatgaaagtaAAATAATCATAAACATAAAATAAGGAAAACACTCACACAAAGTGGCATATTATTGcaatattgcagcccaaaccatcactgatctaCTTCAATGCTTTACTCTGGGgatgcaacagtctgggtggtatgcttctttggggcatctccacaccgtaactctcccgggAAAAAATTGAAGGTGGAGTCAATCAGATTTCCgttgcttttttgtttatttatttgttttatatcataTTCAGAGTTATCTTTTTCTTTCCTAATGTTTTAGTTTACAATATTGTGGAATGGTTAGTTTTTCATTAGGTTATGTTCATGTTTGTTACTAGTTTAAATCTATATATGGACTTAAAAttccaaacaacaacaacaacaacagaaaaggAAATATTGGCTGCACATGTTAACATCTCGTTCTAAAAGAATACTCACACTAAAACTCACTTTTAAACCGAAAATAGCAATAATTATGACACTTCCTGTTATTGTAATGATGCATTTgacagtttaatatatttttaatgatcaactaattttaatattgctgtgatttttaacattattttatcgGTCTTACCACATTACATGACTTGTTTtatggaaatattttaaatttcttttgaCCAACTGACCAATAATTATAACATTCTGCCACAAGATTTTTTTCAGTACCTGCAACTAAGAGACATTGTGAAAAAGACACTACAATACTCGAAAATCA

Function


GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0051179 localization biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00065234 lncRNA downstream 3650 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00065233 lncRNA downstream 99927 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00064441 lncRNA downstream 553822 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 558282 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 708500 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065237 lncRNA upstream 9117 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065238 lncRNA upstream 1042258 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065239 lncRNA upstream 1539986 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 1745246 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 1745357 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064448 mRNA downstream 75407 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064444 mRNA downstream 275877 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA downstream 276457 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA downstream 276457 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064443 mRNA downstream 496810 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064449 mRNA upstream 94435 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064451 mRNA upstream 208876 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064452 mRNA upstream 227295 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 227853 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064458 mRNA upstream 523476 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064447 other downstream 344702 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 577999 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1321045 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1867989 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 2098916 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064450 other upstream 98997 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 255810 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 257655 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 257660 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 267996 50754501 ~ 50756448 (-) True XLOC_033179

Expression Profile


Expression of TCONS_00065235 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.
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Expression of TCONS_00065235 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.