RNA id: TCONS_00065236


Basic Information

Item Value
RNA id TCONS_00065236
length 1282
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_033174
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50457968 ~ 50505438 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGGAGAGAGCGAGTGAAAGAGATATTTCAGCTCCTGACAATAACAAACAATGACCAGCACTTTCATAACATAAAGAGATCCTGTGATATTCTGCTAAACATCTCCTATTGTGTCCTGCAGAGGAAATAAGGCCAAATGGCATTATGCCTGAGAGGGAAGGGGGCTGAACCACCACAACAATTCCCCTGAAGAGGCGCTGGTCAGACCCCTGCAGATCTGGCTGACAGAGCGAGACCTCCGGCTGTCATGAGCCATTAACCTGCCAGAGACTCCAGGGAACACACACTCTGATGGAGGGGCGCACAAAAAAACAGGTTTCTTTAGCTGAGAGCCAATGGTTGAGTTGTATTTGTGTCATTAAAATTAAACagaacttattttaaatgaacataattaataatatgcaAGCAAAGCATTTCTCTAGACAAATTTCCATCATACTAAACATTTCCAACACACAGTATTGTGCAATAGTCTTAACAGTTTTTGTTGGTTTAAAACTTTACAAAACTGTATCCATAATCTTtttcagtctctttattaaaataaacatgaaagtaAAATAATCATAAACATAAAATAAGGAAAACACTCACACAAAGTGGCATATTATTGcaatattgcagcccaaaccatcactgatctaCTTCAATGCTTTACTCTGGGgatgcaacagtctgggtggtatgcttctttggggcatctccacaccgtaactctcccgggAAAAAATTGAAGGTGGAGTCAATCAGATTTCCgttgcttttttgtttatttatttgttttatatcataTTCAGAGTTATCTTTTTCTTTCCTAATGTTTTAGTTTACAATATTGTGGAATGGTTAGTTTTTCATTAGGTTATGTTCATGTTTGTTACTAGTTTAAATCTATATATGGACTTAAAAttccaaacaacaacaacaacaacagaaaaggAAATATTGGCTGCACATGTTAACATCTCGTTCTAAAAGAATACTCACACTAAAACTCACTTTTAAACCGAAAATAGCAATAATTATGACACTTCCTGTTATTGTAATGATGCATTTgacagtttaatatatttttaatgatcaactaattttaatattgctgtgatttttaacattattttatcgGTCTTACCACATTACATGACTTGTTTtatggaaatattttaaatttcttttgaCCAACTGACCAATAATTATAACATTCTGCCACAAGATTTTTTTCAGTACCTGCAACTAAGAGACATTGTGAAAAAGACACTACAATACTCGAAAATCA

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0051179 localization biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065234 lncRNA downstream 3650 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00065233 lncRNA downstream 99927 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00064441 lncRNA downstream 553822 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 558282 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 708500 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065238 lncRNA upstream 1032880 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065239 lncRNA upstream 1530608 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 1735868 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 1735979 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA upstream 1737858 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064448 mRNA downstream 75407 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064444 mRNA downstream 275877 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA downstream 276457 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA downstream 276457 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064443 mRNA downstream 496810 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064449 mRNA upstream 85057 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064451 mRNA upstream 199498 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064452 mRNA upstream 217917 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 218475 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064458 mRNA upstream 514098 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064447 other downstream 344702 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 577999 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1321045 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1867989 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 2098916 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064450 other upstream 89619 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 246432 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 248277 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 248282 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 258618 50754501 ~ 50756448 (-) True XLOC_033179

Expression Profile

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