RNA id: TCONS_00064454


Basic Information

Item Value
RNA id TCONS_00064454
length 1006
RNA type processed_transcript
GC content 0.31
exon number 3
gene id XLOC_033178
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50742315 ~ 50747545 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgacggcgacggccacatcgaagggctatgcgtcagcgccatagcatacgccggcgtttgacgcagaagtataaatcagccttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTATCTGAAGTTGAACTAACTGGAAGCAGGGAACCATACTAATAAAGTTCCTTAagcagTTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCATTGGACTGTTTTTTTTGGCTTTGACCCTTGCTTGCCCCTGACCTCACTCTTGGACTGCCCTGTtggattttcagtttatttaatttaaaaaaaaaaatttggttctgggtagatgctaataaatatttaattgtaattatttaatgtaaatcaaaggcggcaacaccaaggctccaaaaatacaaatttattaaattaaaaaggctgacacagagcgtgtaacgtttcgagccgccggctcttcatcagacaaatTCTTTTtcgttgtaattttttaaataatatgtttttgttaaatattcgatttctgtgtttgttctgtctacTCGTACTTGTTTATCTTGTCTCTGTAATtatcatttgttaatttaattaatatgcattttataaaaaaaatatatatatatattttctgtgttttttttttctgtatctatttatctaatttgtatatacatttgtgtttgtatgtttttcttaTTCTGTATATCCACTTACctaattttaacttttatatttatttatttgcatttaatttgtgataattctgtatgcatttatttatctaattcatatatttatatgtattgcaTTGAtcaatctgttgttgttttttttgtatgcatctattaatataatttatataaattctatatttgtatttatcaatttatatgcttcctttaaagcaattttttaaataaagcaatttaaactaag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156815

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065237 lncRNA downstream 236877 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065236 lncRNA downstream 246432 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065235 lncRNA downstream 255810 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00064757 lncRNA downstream 257917 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065234 lncRNA downstream 265826 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00065238 lncRNA upstream 783834 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065239 lncRNA upstream 1281562 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 1486822 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 1486933 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA upstream 1488812 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064452 mRNA downstream 11566 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA downstream 11566 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064451 mRNA downstream 37626 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064449 mRNA downstream 56453 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064448 mRNA downstream 337583 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064458 mRNA upstream 265052 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064461 mRNA upstream 275989 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064460 mRNA upstream 275989 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064459 mRNA upstream 275989 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064462 mRNA upstream 435177 51180106 ~ 51386656 (-) True XLOC_033180
TCONS_00064450 other downstream 154585 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064447 other downstream 606878 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 840175 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1583221 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 2130165 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064457 other upstream 9572 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064464 other upstream 786077 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064491 other upstream 2178444 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 2288067 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 2528907 53273836 ~ 53279930 (-) False XLOC_033204

Expression Profile

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