RNA id: TCONS_00064461



Basic Information


Item Value
RNA id TCONS_00064461
length 4308
RNA type mRNA
GC content 0.53
exon number 28
gene id XLOC_033180
representative False

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 51009981 ~ 51386696 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGCCATCTTCCCCTCTTTTCTCTGGTGTGTTTTCTGTAGGCAGCTGTTCGTTTGAGGAACACTACAGTAATTGCGGATACAGTGTGGCGTTGGGGACTAATGGCTTCGCCTGGGAGCAAGTCAACACCTGGGAAAGACCCTCCATGGACGCCGCCGTCCCCACAGGTTCCTTTATGATGGTGAATGCTTCGGGTCGGGCATCAGGACAGAAAGCCCACCTGCTCCTCCCCACTCTAAAAGAGAACGACACCCACTGCATAGACTTTCACTACTCCCTGTCCAGTCGGGATGGGACGAGTCCCGGGACTCTCAATGTCTACATAAAAGTGGATGGTGGACCGCAGGGAAATCCCATCTGGAACGCCTCCACTCCGGTCACTGAAGGCTGGGTGAAAGCTGAACTCGCCATCAGCACCTTTTGGCCCAACTCCTACCAGGTTATTTTTGAGGCAGTAAGTGTACAAGGGCATCCTGGGTTCATCGCGGTGGATGAGATACATGTTTTGGCCCACCCTTGTcGCAAGACGCCACATTTCCTGCGACTCCAAAATGTGGAGGTGAATGTGGGACAGAACGCAACATTTCAGTGTATTGCTGGAGGCAAATGGTCACAACATGACAAACTCTGGCTACAGCAATGGAATGGTAAAGACACGTCTCTCATGGTAACGCGAGTGGTGAACCATCGACGATTCTCAGCCACTGTTAGCGTAACGGACACGTCCCAGCGGAGCACCAGCCGTTACCGCTGCGTCATTCGGTCTGATGGAGGATCTGGAGTCTCCAACTATGCTGAGCTCAGTGTCAAAGCACCCCCTACACCCATCGCCCCCCCTGAGCTTCTTGCAGTTGGCGCCACCTACTTGTGGATCAAACCGAACGCCAACTCCATCATCGGCGATGGCCCTATCATCCTGAAAGAGGTGGAGTATCGCACCACCACTGGAAACTGGGCCGAGACGCACGTCGTGGATGCACCAACTTACAAACTCTGGCATTTGGACCCAGATGTGGAGTATGAGATTAAAGTTCTTCTCACCCGACCTGGGGAGGGCGGCACTGGACCACCAGGACCACCGCTTATAACTCGCACCAAATGTGCTGATCCAGTCAATGGTCCCCAGAACGTGAATGTGGTGGATATCCGCGCTCGTCAGCTCACCCTGCAGTGGGAGACGTTTGGATATGCTGTGACCCGCTGCCACAGTTTCAACCTGACCGTTCAGTACCAGTATGTGTTCAACCAGCAGGTGTACGCTACAGAGGACCTCATCCCCACCTCCTCTCATTACACGCTGCGGGGACTGAGGCCATTCGTGACCGTCAGGCTCCGACTGGTGCTCGCAAACCCAGAGGGCAGCAAGGAGAGCGAGGAGATCGTCAAACAGACTGAGGAAGACGTTCCTGGCCCCATTCCTATGGAGTCTATTCAGACGGGACCATATGAGGAGAAGATCTTCATGCAGTGGAAGGCCCCGAACGAAACAAATGGAGTCATTACTCTCTATGAGATCGCCTATAAGGCTCTTAGCTCTCTGGATCCCACTGCGGATTTGACAACACAGCGAGGCCGGGTCTTCAAACTCCAAAACGAGACCCATCATCTCTTCGTTGGGTTGTATCCAGGGACCACATACTTCTTTACTCTAAAAGCCAGCACAAACAAAGGCTTCGGCCCACCTGTGACCACCCGTATCACCACCAAGATCGCAGCTCCATCCATGCCTGAATATGAGACTGACTCTCCTCTCAATGAGACAGACACGACCATCACCGTCCTCTTAAAACCCGCTCAATCACGAGGAGCACCAGTCAGTTCTTATCAAGTGGTGGTTCAGGAGGAGCGGAAGCAGAAAGTCCGGCGAGCCACTGATGTTCTGGAGTGTTTCCCTGTTCCCGTGAGCTTCAGAAATGCTTCAATCTTGGATTCTCCTCACTATTTCGCAGCTGAACTCCCTCCGGTTAGCCTTGCTGTAGTTCAGCCCTTTACTATAGGGGACAACAAGACTTATAATGGCTACTGGAATGCTCCACTGTCACCTGCCAAAAGCTACAGCATTTACTTTCAGGCCCTGAGCAAAGCCAACGGGGTGAGTACttcattttgtctttattttgtttccaGTGCATCTACCCAGAATTCCAATGACATTGAGCCTGAAAAACAGGTGGACAGCACAGTAAAGATGGCAGGCGTCATTGCAGGAATCCTCATGTTTGTCATCATTCTCCTGGGCCTTCTCCTCACCTTCAAACGCAGGAAACTAGCTAAGAAACAGAAGGAGACAGCCAGCAGCAGCACGCAGAGAGAGATGGGACCCGTAGGCACAGCGGATAAAAGCACAGGAAAAGTCAGCACATTACACAAGGACGATCCGTTCTCCACCAGCAACCAGGACCTCAACGGATTCTATGGCAGTCACAGTGAGATGTCCCAGCCCTCCATGACCATCCAGACATACCCATATGGAGGCTGTGAGTCGGTGGAGATGTCCTACCAGGCCGGCCAGTTTCAACCGGCCATCAGAGTGGCAGATTTGCTTCAGCACATCACCCAGATGAAGTGTGGCCAGGGTTACGGCTTTAAAGAGGAGTATGAGGGTCTGGCTGAGGGACAAACTGCCCCATGGGAAACTGCCAAGAAAGAGGAAAACCGCAACAAAAACCGCTACGGCAACATCATCGCTTACGATCACACTCGTGTCCGACTGCAGCCGCTGGAGGGAGACCCACACTCCGACTACATCAACGCCAACTATATAGATGGCTACCACAGACCAAGACACTACATAGCAACGCAAGGCCCCATGCAGGAGACCGTCAGGGATTTCTGGAGGATGATTTGGCAGGAGAATTCAGCCAGTATCGTCATGGTAACCAACCTGGTGGAAGTGGGCAGGagaaaccaggctcagttgggcacgaccgtttctccaaacGTGAAGTGCGTTCGCTACTGGCCTGACGAGACCGAGGTGTATGGAGATATCAAAGTCACACTGATTGAAACGGAGCCGTTGGCAGAATATGTAATCAGGACTTTTACTGTACAGAAGAAGGGTCACCATGAGATCCGGGAGATCCGGCAGTTCCACTTTACCAGCTGGCCTGATCACGGCGTCCCCTGTTATGCCACAGGCCTGCTGGGCTTCATCCGCCAGGTCAAGTTCCTCAATCCTCCAGACGCAGGACCCATCGTGGTTCACTGCAGTGCTGGTGCTGGAAGAACAGGCTGTTTCATTGCGGTGGACATCATGCTGGACATGGCGGAGAGTGAAGGAGTGGTGGACATCTTTAACTGCATCAGAGAGCTGCGCTCGCAGAGAGTCAACATGGTGCAGACTGAGGAGCAGTATGTGTTTGTACATGATGCCATCCTGGAAGCATGTTTATGTGGAAACACAGCAATCCCAGTGTGTGAATTCAGAGCCATTTACTACAACATCAGCAGACTGGACCCGCAGACCAACTCCAGCCAGGTCAAAGATGAGTTTCAGACTCTGAATATAGTGACGCCGCGTGTTCGTCCAGAGGACTGCAGCATTGGCCTTCTCCCACGTAACCATGATAAAAACCGCAGCATGGACGTCCTCGCAGTGGACCGATGCCTGCCTTTCCTCATTTCTGTTGATGGCGAGTCCAGCAATTACATCAATGCAGCGCTGATGGACAGCCACAAACAGCCAGCGGCCTTCATCGTGACGCAGCACCCTCTGCCCAACACCATGGCCGACTTCTGGAGGCTCGTGTTTGACTACAACTGCTCCACCATCGtcatgctgaatgaaatggacgcTGCACAGCTCTGCATGCAGTATTGGCCAGAGAAAGGCTCCTGCTGTTATGGGCCCATACAGGTCGAGTTCATCTCTGCTGACATTGACGAGGACATTATCAATCGCATTTTTAGGATCTGCAACATGGCTCGGCCTCAAGACGGCTACCGGCTGGTCCAGCATTTCCAGTTCATCGGTTGGCCTGCGTACAGAGACACGCCGCTGTCCAAACGCTCCATCCTGCAGCTGGTCAGACGACTGGCCAAATGGCAGGAGCAGTATGATGGAGGAGATGGACGTACAGTCGTCCACTGCCTGACGGGCGGAGGACGCAGCGGGACGTTTTGTGCCATCTGTAGCATCTGTGAGATGATCCAGCAGCAGAACATCGTGGACGTTTTTCACACAGTCAAGACGCTGAGAAACAACAAAGCCAACATGGTGGAGACAATGGTGAGCTATACACTTACAGATATCAACACACATAAATGCATGTGGAAACGTGTTTCTACCGTTAAAATGTGGGGTTAG

Function


GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-101028-4 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPRT (protein tyrosine phosphatase receptor type T).

Ensembl:

ensembl_id ENSDART00000184928

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00065237 lncRNA downstream 515480 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065236 lncRNA downstream 525035 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065235 lncRNA downstream 534413 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00064757 lncRNA downstream 536520 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065234 lncRNA downstream 544429 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00065238 lncRNA upstream 142067 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065239 lncRNA upstream 639795 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 845055 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 845166 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA upstream 847045 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064452 mRNA downstream 290169 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA downstream 290169 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064451 mRNA downstream 316229 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064449 mRNA downstream 335056 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064448 mRNA downstream 616186 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064463 mRNA upstream 142512 51529208 ~ 51541488 (-) False XLOC_033181
TCONS_00064465 mRNA upstream 162507 51549203 ~ 51573975 (-) False XLOC_033182
TCONS_00064466 mRNA upstream 162635 51549331 ~ 51556308 (-) True XLOC_033182
TCONS_00064467 mRNA upstream 189228 51575924 ~ 51666739 (-) False XLOC_033183
TCONS_00064468 mRNA upstream 193560 51580256 ~ 51665454 (-) True XLOC_033183
TCONS_00064457 other downstream 264470 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 273373 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 275663 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 275989 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064450 other downstream 433188 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064464 other upstream 144310 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064491 other upstream 1536677 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 1646300 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 1887140 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 3119762 54506458 ~ 54506586 (-) True XLOC_033221

Expression Profile


Expression of TCONS_00064461 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.
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Expression of TCONS_00064461 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00007943 True 2172 mRNA 0.56 18 CM030123.1 37791441 ~ 37827192 (-)