Item | Value |
---|---|
RNA id | TCONS_00064461 |
length | 4308 |
RNA type | mRNA |
GC content | 0.53 |
exon number | 28 |
gene id | XLOC_033180 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007117.7 |
NCBI id | CM002890.2 |
chromosome length | 60270059 |
location | 51009981 ~ 51386696 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006470 | protein dephosphorylation | biological_process |
GO:0016311 | dephosphorylation | biological_process |
GO:0016020 | membrane | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0016787 | hydrolase activity | molecular_function |
GO:0016791 | phosphatase activity | molecular_function |
GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
id | description |
---|---|
ko01009 | Protein phosphatases and associated proteins |
id | description |
---|---|
ZDB-GENE-101028-4 | Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPRT (protein tyrosine phosphatase receptor type T). |
ensembl_id | ENSDART00000184928 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00065237 | lncRNA | downstream | 515480 | 50495622 ~ 50505438 (-) | True | XLOC_033174 |
TCONS_00065236 | lncRNA | downstream | 525035 | 50480139 ~ 50495883 (-) | False | XLOC_033174 |
TCONS_00065235 | lncRNA | downstream | 534413 | 50480139 ~ 50486505 (-) | False | XLOC_033174 |
TCONS_00064757 | lncRNA | downstream | 536520 | 50476213 ~ 50484398 (-) | False | XLOC_033174 |
TCONS_00065234 | lncRNA | downstream | 544429 | 50457968 ~ 50476489 (-) | False | XLOC_033174 |
TCONS_00065238 | lncRNA | upstream | 142067 | 51528763 ~ 51538548 (-) | False | XLOC_033181 |
TCONS_00065239 | lncRNA | upstream | 639795 | 52026491 ~ 52034656 (-) | True | XLOC_033186 |
TCONS_00064474 | lncRNA | upstream | 845055 | 52231751 ~ 52234719 (-) | False | XLOC_033188 |
TCONS_00064475 | lncRNA | upstream | 845166 | 52231862 ~ 52234719 (-) | False | XLOC_033188 |
TCONS_00064476 | lncRNA | upstream | 847045 | 52233741 ~ 52234648 (-) | True | XLOC_033188 |
TCONS_00064452 | mRNA | downstream | 290169 | 50713800 ~ 50730749 (-) | False | XLOC_033177 |
TCONS_00064453 | mRNA | downstream | 290169 | 50714358 ~ 50730749 (-) | True | XLOC_033177 |
TCONS_00064451 | mRNA | downstream | 316229 | 50695381 ~ 50704689 (-) | True | XLOC_033176 |
TCONS_00064449 | mRNA | downstream | 335056 | 50580940 ~ 50685862 (-) | False | XLOC_033175 |
TCONS_00064448 | mRNA | downstream | 616186 | 50401620 ~ 50404732 (-) | True | XLOC_033173 |
TCONS_00064463 | mRNA | upstream | 142512 | 51529208 ~ 51541488 (-) | False | XLOC_033181 |
TCONS_00064465 | mRNA | upstream | 162507 | 51549203 ~ 51573975 (-) | False | XLOC_033182 |
TCONS_00064466 | mRNA | upstream | 162635 | 51549331 ~ 51556308 (-) | True | XLOC_033182 |
TCONS_00064467 | mRNA | upstream | 189228 | 51575924 ~ 51666739 (-) | False | XLOC_033183 |
TCONS_00064468 | mRNA | upstream | 193560 | 51580256 ~ 51665454 (-) | True | XLOC_033183 |
TCONS_00064457 | other | downstream | 264470 | 50754501 ~ 50756448 (-) | True | XLOC_033179 |
TCONS_00064456 | other | downstream | 273373 | 50744165 ~ 50747545 (-) | True | XLOC_033178 |
TCONS_00064455 | other | downstream | 275663 | 50744160 ~ 50745255 (-) | False | XLOC_033178 |
TCONS_00064454 | other | downstream | 275989 | 50742315 ~ 50744929 (-) | False | XLOC_033178 |
TCONS_00064450 | other | downstream | 433188 | 50585502 ~ 50587730 (-) | True | XLOC_033175 |
TCONS_00064464 | other | upstream | 144310 | 51531006 ~ 51541488 (-) | True | XLOC_033181 |
TCONS_00064491 | other | upstream | 1536677 | 52923373 ~ 52923489 (-) | True | XLOC_033198 |
TCONS_00064492 | other | upstream | 1646300 | 53032996 ~ 53033111 (-) | True | XLOC_033199 |
TCONS_00064499 | other | upstream | 1887140 | 53273836 ~ 53279930 (-) | False | XLOC_033204 |
TCONS_00064524 | other | upstream | 3119762 | 54506458 ~ 54506586 (-) | True | XLOC_033221 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
bowfin (Amia calva) | AMCG00007943 | True | 2172 | mRNA | 0.56 | 18 | CM030123.1 | 37791441 ~ 37827192 (-) |