RNA id: TCONS_00064474


Basic Information

Item Value
RNA id TCONS_00064474
length 802
lncRNA type sense_over
GC content 0.47
exon number 4
gene id XLOC_033188
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52226682 ~ 52235118 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCGAGGCTCGACAGCCGCTTCAGTCCcgaaaactgaaactgaaatttAATACCGCCCGTTTCATTAGACACACAGCCGGTAAAACGTGGTGCTCATCCCGACTAGCGTGTGTGTGAAAGGCGGAGAAGAGAATTTCTAGCATGTTCTAGGAGGAGGACGGACTGGTTATCTAGTATAGGTCTCTAGCTCGTTGTTAAATACAGTAACTGCTAACTTTAAACAGCCGATCACTAAAGCTCTTCCTTCAGCCTTTACTTTCCGGGTTTTTCCACCAACACGATTCTATAGGTGTTAACATGCCTCAGAAGCGGCGCACGCAGTCGTGGACGGATCTCAAACAAGCCGGTAACGAGTGCTTCAAAGCGGGTCAGTATGGAGAAGCGGTGACCCTCTACAGCCAGGCCATCCAGCAGCTGGAGAAATCTGGTCAGAAGAAAACTGAAGATCTGGGTATTTTGTACTCAAACAGGGCCGCCAGTTACCTGAAAGATGGAAACTGCAATGAATGCATTAAAGACTGCACGGCGTCGCTTGACTTGGTTCCATTTGGATTTAAAGCTCTGCTACGCCGTGCAGCAGCTTTTGAAGCTTTGGAGAGATACCGACAAGCATATGTGGACTACAAAACAGTTTTACAGATCGACTGGAACATACCAGCTGCTCACGATGGAGTCAACAGGTAATCCAGCACGGATCCAGAATTTTGCATGTTCACAGAGAATGCACTACTGAGGTCCTATAATCTCCTAACATGTGGTACTTTTCTAATGTATGGTATGACTGGGTTTCACTGCAGTTCA

Function

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0031072 heat shock protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065239 lncRNA downstream 197095 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 693203 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065237 lncRNA downstream 1726313 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065236 lncRNA downstream 1735868 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065235 lncRNA downstream 1745246 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00064758 lncRNA upstream 1017838 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 1039121 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 1376396 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1930213 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1930213 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064471 mRNA downstream 75324 52081752 ~ 52156427 (-) True XLOC_033187
TCONS_00064470 mRNA downstream 420656 51796296 ~ 51811095 (-) True XLOC_033185
TCONS_00064469 mRNA downstream 460117 51769760 ~ 51771634 (-) True XLOC_033184
TCONS_00064467 mRNA downstream 565012 51575924 ~ 51666739 (-) False XLOC_033183
TCONS_00064468 mRNA downstream 566297 51580256 ~ 51665454 (-) True XLOC_033183
TCONS_00064477 mRNA upstream 104829 52339548 ~ 52348651 (-) False XLOC_033189
TCONS_00064478 mRNA upstream 107469 52342188 ~ 52348585 (-) False XLOC_033189
TCONS_00064479 mRNA upstream 111158 52345877 ~ 52348562 (-) True XLOC_033189
TCONS_00064480 mRNA upstream 127676 52362395 ~ 52428826 (-) False XLOC_033190
TCONS_00064481 mRNA upstream 129760 52364479 ~ 52400896 (-) True XLOC_033190
TCONS_00064464 other downstream 690263 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 1475303 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 1484206 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 1486496 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 1486822 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064491 other upstream 688654 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 798277 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 1039117 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 2271739 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 2272386 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

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