RNA id: TCONS_00064479


Basic Information

Item Value
RNA id TCONS_00064479
length 775
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_033189
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52339548 ~ 52348651 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTACaattaagtttaattttattgtGTAATGACGTTTAGctcataatttgtattattacccGCGTCGTCATTCGAGGGTAGAGAATTGTTGGCGTTTAATGTCTAGAGAAGTTGAAGTAACTTCATTTAGCCGACTGCTAACCACCTCGACCAGTGGCTATTCAGTGAAAGTTACTTAAAACGCGTTAAACTCTGAAGTTTTGCTGAAAATTAGGTTAGTCTTGCTTCTCTAGACAcgacatattttaaaatgttgtcaaACGTTTGACTCAGTTACATAAAAATGTTCCTCTCACTCAATTTATAACGTTACCCGATAAGATGTTAGTGAAGTTTACCCTCTGTTGACTTGAGATTCAGACAGCTTCCTCCAGATCAGCAGAATGGCAGTTCGTGCATCATTTGAAAAGAATAATGAAATTGGATGCTTTGCCAAGCTTACTAACACATACTGTTTGGTAGCAATTGGTGGTTCAGAAAATTTTTACAGTGTTTTTGAAGGTGAACTGTCAGAAACGATGCCCGTCATTCATGCCTCTATAGCAGGATGTCGAATCATTGGGAGAATGTGTGTGGGAAACCGTCACGGTCTCTTGGTGCCCAACAACACGACAGATCAGGAGTTACAGCACATCAGAAACTGCCTGCCAGACTCCGTGCGCATCCAGAGAGTAGAGGAGCGTCTTTCTGCACTGGGAAACGTCATCGCTTGTAACGACTATGTTGCTCTCGTTCATCCAGACCTTGACAGAGTAAGAACATCTTCAaactt

Function

GO:

id name namespace
GO:0000054 ribosomal subunit export from nucleus biological_process
GO:1902626 assembly of large subunit precursor of preribosome biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042256 mature ribosome assembly biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043022 ribosome binding molecular_function
GO:0043023 ribosomal large subunit binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-031118-110 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in assembly of large subunit precursor of preribosome and ribosome biogenesis. Predicted to act upstream of or within mature ribosome assembly and translational initiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in cytosol and nucleolus. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human EIF6 (eukaryotic translation initiation factor 6).

Ensembl:

ensembl_id ENSDART00000142565

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064474 lncRNA downstream 111158 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 111158 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 111229 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 311221 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 807329 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00064758 lncRNA upstream 903995 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 925278 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 1262553 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1816370 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1816370 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064473 mRNA downstream 110759 52226682 ~ 52235118 (-) False XLOC_033188
TCONS_00064472 mRNA downstream 111081 52226682 ~ 52234796 (-) False XLOC_033188
TCONS_00064471 mRNA downstream 189450 52081752 ~ 52156427 (-) True XLOC_033187
TCONS_00064470 mRNA downstream 534782 51796296 ~ 51811095 (-) True XLOC_033185
TCONS_00064469 mRNA downstream 574243 51769760 ~ 51771634 (-) True XLOC_033184
TCONS_00064480 mRNA upstream 13833 52362395 ~ 52428826 (-) False XLOC_033190
TCONS_00064481 mRNA upstream 15917 52364479 ~ 52400896 (-) True XLOC_033190
TCONS_00064482 mRNA upstream 119577 52468139 ~ 52484566 (-) True XLOC_033191
TCONS_00064483 mRNA upstream 172905 52521467 ~ 52566574 (-) True XLOC_033192
TCONS_00064484 mRNA upstream 288746 52637308 ~ 52661824 (-) False XLOC_033193
TCONS_00064464 other downstream 804389 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 1589429 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 1598332 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 1600622 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 1600948 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064491 other upstream 574811 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 684434 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 925274 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 2157896 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 2158543 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

//