RNA id: TCONS_00064484


Basic Information

Item Value
RNA id TCONS_00064484
length 1848
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_033193
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52637308 ~ 52661824 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCATACCTGAATCAAATCAACAGTTGGTTTATTAGAGGATTTATCGTGTAAAATGGCTAACGAAGGAGGAGGAATAAAACGTTTTTCGATTCAGCAATGCACTTGAAGTTAAACCGTTGGAGGCCGAAAAAGCGCTGGATAAAGATGAGCGTGCGCCCCTGCTGAGACGCCAGCGGTACGTCTTCAACATCAGCTCAATGGAGAAGGAGGGTCTGCTGGGTGCGGAGCTGCGGATCCTCCGAAAGAAGCACATGGACTCTCGAAAAGCCACTTTCTCTGAGGGCATGGCAGTTCTGAGACTCTTCACCTGCGCCTCAGGTAAAAACGCAGCCGTCCTGCTGCAGGCGAGACCTTTCGACTCTCACAGCGCCTCCTACTGGGAGGTGTTTGACATCTGGAAGGTGTTCAAGAACTTCAGAAACACTCCTCAGCTCTGCTTGGAGCTGGACGCCGTTGATCACGGCCGACCGCTTGACTTGAGGTTACTGGGATTGAGTCGGGCAGGACGGCAAACTAAGGAGAAAGCCTTCTTCGTGGTGTTCGGGCGCACAAAAAAGCGAGGGCTCTTTTACAATGAAATCAAAGCACGGTCCGGGCATGATAATAAGACCGTGTATGAGTATCTGTTCACTCAGAGGCGGATGCGTCGGGCACCGTTGCCGCGTGGGAAAAAACCAATCAAGAACCCCAAACAGAGATGCAACCGCAAGCAGTTGCACGTGAACTTCAAGGAAATGGGCTGGGATGACTGGATCATCGCTCCGCTGGAGTACGAGGCCTTTCACTGCGATGGCGTCTGTGACTTTCCCATCCGCTCCCATTTAGAACCGACCAATCACGCCATCATCCAGACTCTGATGAACTCTATGGACCCTAGATCCACGCCGCCGACCTGCTGCGTGCCCACCAGACTCAGCCCCATCAGCATTCTGTACATTGATTCAGCCAATAATGTGGTGTACAAGCAGTACGAGGACATGGTGGTGGAGAGCTGTGGCTGCAGGTAGCAAGAcatgaacatttacattttggGGTTTTGTGACTTCCAGACTTTGTCACAACGTTTTAATAAGACTGCCAAAACTAAGAGTACGACTTTCATTTGTTGCAAACGTAGCCCAGgcatgcccaaactcggtcctggagggcaagtgtcctgcatattttagttccaaccccaattaaatatAGCTGAACCAGCAAttcaagctctttctagatatactagaaacttctagacaggtgtgttgaagtaagTTGTAGCTAAACTCCCTCTAGGAACGAGTTTGGAGACCTCTGCTTCAGCATTTCAACATGGATGGTTGTGCACAATGCTGAATTTAACAGAGAATCTTTTAAATcccattttaattttttgaattTGAATACAGGTCACAAACACAATgcaaaatagttatttaaatgtgaaaattaagGAATTTTAGACACTTTTCCAGTATCGTGGTTAACAgttctaatgctgggttcacaccaaacatgTATCTCTCACTCTAGTTTACTCGTGGGACTTTCATTAGGGTGTGGCTAATTCACATTCTCACTCGGTTCCATTCCGAACGGCTCATCTTTTCTCTTATACTTTGAAGTCTTTACCCTACGGAGTGAGAGTTTCAAAGGGATTAGGGTATTTCCCTTCCGAATGGAACACAATGTGCGACAGagtgtcagtagctatgtttccatccacctattttatgcacattttgcaaatgcgcataaaaaatcaGTTAATGGAAActccatgatgcgcataaattttgaaaatgcgcataaaaatcttatgcgcctaactgggtaggataaacttttttattcgataagaaaa

Function

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04390 Hippo signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04052 Cytokines and growth factors

ZFIN:

id description
ZDB-GENE-990415-39 Predicted to enable cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in perichondrium; pharynx; and skeletal system. Human ortholog(s) of this gene implicated in Parkinson's disease and bone disease (multiple). Orthologous to human GDF5 (growth differentiation factor 5).

Ensembl:

ensembl_id ENSDART00000149343

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064474 lncRNA downstream 402589 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 402589 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 402660 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 602652 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 1098760 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00064758 lncRNA upstream 590733 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 612016 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 949291 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1503108 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1503108 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064483 mRNA downstream 70734 52521467 ~ 52566574 (-) True XLOC_033192
TCONS_00064482 mRNA downstream 152742 52468139 ~ 52484566 (-) True XLOC_033191
TCONS_00064480 mRNA downstream 208482 52362395 ~ 52428826 (-) False XLOC_033190
TCONS_00064481 mRNA downstream 236412 52364479 ~ 52400896 (-) True XLOC_033190
TCONS_00064478 mRNA downstream 288723 52342188 ~ 52348585 (-) False XLOC_033189
TCONS_00064486 mRNA upstream 1273 52663097 ~ 52675630 (-) True XLOC_033194
TCONS_00064487 mRNA upstream 53884 52715708 ~ 52723901 (-) True XLOC_033195
TCONS_00064488 mRNA upstream 94510 52756334 ~ 52757276 (-) True XLOC_033196
TCONS_00064489 mRNA upstream 95609 52757433 ~ 52796212 (-) False XLOC_033197
TCONS_00064490 mRNA upstream 95659 52757483 ~ 52788213 (-) True XLOC_033197
TCONS_00064464 other downstream 1095820 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 1880860 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 1889763 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 1892053 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 1892379 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064491 other upstream 261549 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 371172 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 612012 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 1844634 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1845281 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

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