RNA id: TCONS_00064490


Basic Information

Item Value
RNA id TCONS_00064490
length 1494
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_033197
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52757433 ~ 52796212 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccgtCTGTCTGCTGGGAAACTGCACTTTTATGTCCGTGGGGTCCTAATAAGAGGAAATTAAAACTGCCAGAAAATTgcaatgtGGAGGATCAATCATTCTCCTCCTTGCTGAAAGTGACCAGAGACTCAGTGAGGCAATACCTTCAGTTCAGACCTGACCAATCTGTGACCATTTTACATGCCAAAGTTGCCCAGAAGTCCTACGGCAATGAGAAGAGGTTTTTCTGTCCTCCTCCTTGTGTATACCTCTCTGGACATGGATGGAAAGTCAGACAAGAGCAGTTTAAAGCATCAGGTCTAAATGAATCGGCTTGTCGGATTTTCGGTTACATGGGTCTGGACAGCTCCAATGATCCACGGACAGACAGTTTCAAGCTGAGCTTTGAGGAGCAGACAGACAAGAAGATGTTTGCCTGCGCTAAAACCTTGTACATCTCAGACACAGACAAACGGAAGCACTTCCGCCTGCTGCTACATCTGTTCCACAACGGAGGGCAAGAAATCGGCACGTTCAACAGCAGACTCATTAAAGTCATCTCTAAACCATCGCAGAAGAGACAGTCCATGAAAAACTCTGCATTAATGTGCAATTCTGGAGGCTCAAAAGTGTCATTGTTTAACCGATTGCGGTCGCAGACGGTCAGTACACGGTACCTCGCGGTGGAAGACGGGGCTTTTGTTGCCAGCGCAAGACAGTGGACTGCTTTTACTGAGACGCAGGCCGTGCACAGTGAATACACAATGTGTGAGAGCTACATCTGCTACGGCTGTGTGGTTCAGCTGGTCTGCACTGACTCCGGAGTGGCACTGCCACCAATGGTAATTCGTAAAGTGAACAAGCAGCAGGCATGTCTAGACGTGGATGAACCTGTTTCTCAGCTTCATAAATGTGCTTTCCAGTTCCGAGGCAGCGACCACATGTACCTGTGCCTGTCTAATGAAAAAATCATACAGTTCCAGGCCTCTCCATGCCCTAAAGAGAGTAATAAGGTGTCATTGAATGATGGATCCTGCTGGACGATTATTGGAACAGAGGTGGTTGAATACAGCTTCAGTGAGAGTCTCACCGGTCATCCTGCAACCATCAGCCCTGTGCCTGTTATCAGCGGACTGGAGctgaATGGAGGTGGACATGTGGCCATGCTGGAGCTTCACGGAGAAAACTTCAGTCCACACTTAAGGGTCTGGTTCGGCAACATGGAAGCTGAGACCATGTTCAgGTCCTCCAGGTCTCTGCTGTGTGTGGTTCCTGATGTGTCTATATTGAGTGGTGAATGGAGATGGACGAGGCAGCCAATCACAGTGCCTTTATCTTTGATCCGATTGGACGGTCTGATCTACAGGAGCTGGTTCTCCTTCACGTACACCCCCGAGCACAGCGCCAGCTCCCAGACCAGCGGCTCCGGAGAGAGAAGCGCAGACTCAGACGCTCTCATAGACACCATACACCAGGAGTTCACACGCACCAACTTTCACCTGTTCATGcagagctga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050307-4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human RBPJL (recombination signal binding protein for immunoglobulin kappa J region like).

Ensembl:

ensembl_id ENSDART00000179880

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064474 lncRNA downstream 522764 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 522764 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 522835 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 722827 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 1218935 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00064758 lncRNA upstream 464344 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 485627 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 822902 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1376719 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1376719 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064488 mRNA downstream 207 52756334 ~ 52757276 (-) True XLOC_033196
TCONS_00064487 mRNA downstream 33582 52715708 ~ 52723901 (-) True XLOC_033195
TCONS_00064486 mRNA downstream 81853 52663097 ~ 52675630 (-) True XLOC_033194
TCONS_00064484 mRNA downstream 95659 52637308 ~ 52661824 (-) False XLOC_033193
TCONS_00064493 mRNA upstream 252967 53041180 ~ 53048291 (-) True XLOC_033200
TCONS_00064494 mRNA upstream 261953 53050166 ~ 53144336 (-) False XLOC_033201
TCONS_00064495 mRNA upstream 264351 53052564 ~ 53143667 (-) True XLOC_033201
TCONS_00064496 mRNA upstream 359233 53147446 ~ 53160459 (-) False XLOC_033202
TCONS_00064497 mRNA upstream 364663 53152876 ~ 53204808 (-) True XLOC_033202
TCONS_00064464 other downstream 1215995 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2001035 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 2009938 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 2012228 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 2012554 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064491 other upstream 135160 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 244783 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 485623 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 1718245 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1718892 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

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