RNA id: TCONS_00064494


Basic Information

Item Value
RNA id TCONS_00064494
length 2618
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_033201
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53050166 ~ 53144336 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGACCAAACCGATTTATTAAAACGAATCAAACACCCTAGTCATAACTAGTTGACAGAGAAAGAGCCGAAAACTACTGCATTTCCCACAATTCATGCGCAGTGTCGACCAGTGGGTGGGCGCTGCACGCTTCGGCTTTTTCACATTCTTCTGCTCTGTTTATTCCTCAGAAGAAAGCAGTGCGAGGCGAGCACAGCAGAGTATTCACATTTACTACATTCACAATCTCCCTGCAGCAGGAGCAGTGACATGCTGGACGCTTGAATTCAACACCAAAACCACCGGAGCTCTTTGGCGGCACGATTTGTCACCGCTTGGATACAGTTTTGCGTGGAGAATAAAGATTTAACGGCAGCAAATGATTTGTATTTCAGGAGCTGTGAGCGGCAGATGAAAGCGCCGACGCCGCGGCTGCTCTCTGATCTGAAAGGAGGCGCTAAAGgaagtgattgattgattgattgatctgaTGGCAAACTGAACTGCAACTTTTTAATCGCGTCTCTCTAAACAATTTCTGATTGATGGAGAATCACAGGCCGGGGATTATCGGAATCAAAGCCTTTCAATTGTAACACTTTATATACCGTCTGTCGCGTCTTTACAGTTTAGCGTTGTTTGGCGGAACGGACGATTTCTTTGAAGTTTGACGCGCGCACGCTTCCATCATGGGCTGCACGGTGAGCGCGGAGGACAAGGCGGCCGCAGAGAGATCAAAGATGATCGACAAAAACCTGCGGGAGGATGGAGAGAAGGCGGCGAGGGAGGTGAAGCTGCTCCTGCTCGGTGCGGGTGAATCAGGGAAGAGCACCATTGTCAAACAGATGAAAATCATTCATGAAGACGGATACTCAGAAGACGAATGCAAGCAGTACCGAGCCGTGGTTTACAGCAACACCATCCAGTCCATAATGGCCATCATTAAAGCCATGAGCAACCTGAAGATCGACTACGGGGAAAGTGCACGTGTGGATGATGCGCGGCAACTGTTTGCGCTGTCTGCGGCTGCGGAGGAGCAGGGGATCCTGACTGACGATCTGGCCAATGTGATCCGCAGACTGTGGGCCGATAGCGGCGTTCAGGGCTGCTTCTCCAGATCCAGAGAATATCAGCTCAATGACTCCGCTGCTTACTATCTGAATGATCTGGACAGAATAGCGCGCTCAGACTACATTCCCACCCAGCAGGACGTGTTGAGGACCCGAGTGAAAACCACAGGCATCGTGGAGACTCACTTCACCTTCAAAGACCTGCACTTCAAGATGTTTGATGTCGGAGGTCAAAGGTCAGAGAGGAAGAAGTGGATTCACTGTTTTGAAGGAGTGACGGCCATCATCTTCTGTGTGGCTCTGAGCGCTTATGACCTGGTGCTGGCAGAAGACGAGGAGATGaaccgCATGCATGAAAGCATGAAGCTGTTCGACTCCATCTGTAACAACAAGTGGTTCACCGAGACCTCCATCATCCTCTTCCTCAACAAGAAAGATCTGTTCGAGGAGAAGATCACGCGCAGCCCACTCACCATCTGCTTTCCAGAATATTCAGGAGCCAATAAATACGACGAGGCTGCCAGTTACATCCAGACCAAGTTCGAGGATCTCAACAAGAAAAAGGACACCAAGGAGATTTACACCCACTTCACCTGTGCTACTGACACTAAGAACGTGCAGTTTGTGTTTGACGCCGTTACTGACGTCATTATCAAGAACAACCTGAAGGACTGTGGCCTCTTTTAATGACAGCAGCCCCGGAGAATCATGAGGATGGTGTCTATTCATTTGATGGACCTGGTCAGTGGGTTAGACTGCTAGACTGCCTTCAAACACCTATCAGAAtcgtaatgtgtttttttaatttttattttttttattgtgacaaCCCGAAATGGACGAGTCGTGAACAAGGAAAAGAGAAACTTCACCCAGTTCCAGCACACCATCCTCCTTTCCTGAATCTTGTTTTTAAATCAGTCTCAGTGTGTACATATTTAATTTTCAGCCCAGCGATGAGTGGAGAGTCgggattattctttttttttttctttgtttgtttctatTGAGCTTTTAGGGCATGTTTTTTGACAGCGGGGTCGGGCGCACACTTCTTTTATGGATGTGCTAATTTTATCGAACTCAAAATGCTTCTTTTGTAAAGTAAATGTGAGCACAGAAAGAAAACGAGacatctctttttcttttttgtaaaacatcAGCACCGAATCCTCATCCCACACTCAATCTGTATATTGTTGCATGACGGACCATCCGAACCTGCTCGAAAAAGCTCCAAAACACACAGCGTGACGTCCCTTTACACTCTCTATAGCGTCATCTCTGTCCACTAacgtgtaaatatatattgtgtcCGCCCTCACATTTCCCTGTCCTCATTGCTGTACACCATCTTCCTTTGGCGCGATGTCTGTGCCTTGTTTTCACTGTCTGTAGATCATAGGGCTGTTTTTATTCACTCTATCAAATGGAAAGTGTACAAGTGTTGAGCACATTTTAagagctaaataataataataataataaaactagacTACAGTCTTTGGGTTATTATCTGAATTCCTTACTAATTATTTCATTGGAAATAAAAGTTGATATGTAAGATA

Function

GO:

id name namespace
GO:0001973 G protein-coupled adenosine receptor signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5861 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in several structures, including barbel; lip; nervous system; neural tube; and tail bud. Orthologous to human GNAI2 (G protein subunit alpha i2).

Ensembl:

ensembl_id ENSDART00000154429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064474 lncRNA downstream 815447 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 815447 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 815518 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 1015510 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 1511618 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00064758 lncRNA upstream 108221 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 129504 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 466779 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1020596 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1020596 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064493 mRNA downstream 1875 53041180 ~ 53048291 (-) True XLOC_033200
TCONS_00064489 mRNA downstream 253954 52757433 ~ 52796212 (-) False XLOC_033197
TCONS_00064490 mRNA downstream 261953 52757483 ~ 52788213 (-) True XLOC_033197
TCONS_00064488 mRNA downstream 292890 52756334 ~ 52757276 (-) True XLOC_033196
TCONS_00064487 mRNA downstream 326265 52715708 ~ 52723901 (-) True XLOC_033195
TCONS_00064496 mRNA upstream 3110 53147446 ~ 53160459 (-) False XLOC_033202
TCONS_00064497 mRNA upstream 8540 53152876 ~ 53204808 (-) True XLOC_033202
TCONS_00064498 mRNA upstream 119518 53263854 ~ 53281518 (-) False XLOC_033204
TCONS_00064501 mRNA upstream 129504 53273840 ~ 53282595 (-) False XLOC_033204
TCONS_00064502 mRNA upstream 132911 53277247 ~ 53282572 (-) True XLOC_033204
TCONS_00064492 other downstream 17055 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 126677 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 1508678 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2293718 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 2302621 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064499 other upstream 129500 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 1362122 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1362769 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 1670585 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 2402799 55547135 ~ 55547270 (-) True XLOC_033236

Expression Profile

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