RNA id: TCONS_00064496


Basic Information

Item Value
RNA id TCONS_00064496
length 5834
RNA type mRNA
GC content 0.33
exon number 3
gene id XLOC_033202
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53147446 ~ 53204808 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaaagataGTCAAGGAtgaaataaatcttaattttCCTTCTTTTCAAAGGTGCGGAGAGCCATTCAGGAGATGGCCTTTCCTAATAAAAGCTTCAACTGGATCCGACACATCGCCATCGCTGTCGTTCTCCTGACACTTATTAACATGCTGGTCATCTTCGCTCCCAACATCCTGGGCATCTTTGGCATCATTGGTGCGACATCCGCTCCATGTCTGATCTTCATCTTCCCCGCTGTTTTCTACATCCGCATCGTTCCCAAGGATAAGGAGCCGATGCGCTCTACTCCCAAAATCTTTGCTGCCTGTTTTGCTGGATTGGGGGTGTTGTTTATGATAATGAGCTTGAGCTTCATCATTATTGATTGGACAACGGGCAGCGGCAGTGCTCTCGGCGGCCACTAGGGGACAAACTctgatgaatgtgtgtttgtatgagagtgtgtgtcgTATGTTTAGTAATGATTTATTTGTATCCGTATTTGTCTGACACAAAGGATGCTCTATCTCGCGGTGGGAAGGGAAAGTTGCGGGGGACCCGAAGCAAAAATCCCAATTTCCACAGATGACAATAATTCGGAAAGAAGTCCATTATACTATATTTGTGTCAGTGTGGAATGATTACTTTTGTATTTATTGAAGGGTTAATGCAGCCTCACTTATTCTGTAGAAATACACTTTTATTGCTCCGATTTgctatactttattttttattcactttcTGTTTTATCAATCCAGAGCTTTTACCCTTGATACAAGTACTGTAGAAACACACGACTGtcaaaagcgattagttgactttacttaaactgAGTAAGTCTCTTGTCTTAAAATGATTAAGTTTATGAACTATGTGTCTAATTATAGAAATTAATCCAATAAAAGTTATGTTCCAAATTAtgtcaggtttactcacttttcgaAAAGGCATAGTTTgccaaaaatgtacaaaatttatcaaattttattatttttatttactttatttattaacccttgtgtggtttcttttttctgtcaaaaactaaagaagatattttgaagaaagctggagacctgtacccattgactttcaAAGTGGGAATACTATTGAAATCAATGGCTGCAggtttctaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatatataaaagaaagtCAAAACAAGTGTTAAAATcagaacaaattattaatttgttattaaaattattaaaattattaaaatcaaataaaaacaacatcatactgaataaaatataataaaacttaaaattaatACTTACAAATGAATTATtcagaaacattaaataataatttgaaatttAGGAAGTTAAAaggaaacaaataatttatttttgctatatttaacaattaaaaataaaacgatAGGAATAcacaaaatgtacaaattaaatattattaaaagaaatataaaaacattaaataatgacattacatttaagaaaataaaaaggaaaataaatttatttatgcttaattaaacaaataaaaataatttattttgggaTGAATAAAACCTACAACTACATCACATTTTTTGAagcgtgagtaaatgattacagaaattccatttttgggtgagtaAAGTTATTAATTGGTTTAACAGTACATAATTCAATTCTTAACTCACAACAtaacgtttgctgtttgttcaaactatttaaaatgagctgaaacaacacaatttacaACTCGACTCAAAACACAACTCTCTTAAGCTTTCGGTGTTTTGAGGGATAAAAAGCAGATTCTGTAACCTTATCTTTTTACTTTAAAACCAATGCTctaaagtattcaacaatttaatttaaaatgtcctatcgtgtttttcttttttttttaattggacaatggatttaaatgtgaaaagtaCATACAACATATATAAACGTAATAAACTGTCGTGGTTGggtgctggaaaagcataaaaatgcatcttgaaagtgcttgaaaagtgctggaataaggtgtaagaaccctgatTTTACTTACAGATTGTGAATTATTTCTGTTGCAACTTCTAAATATTAAGTTAAgtgaacttaatagttttaagtaTGCACATAGTTCATTAACCTAATCATTTTAATGCAGAGTTTactaagtcaactaatcgctttttacagtgtactgcacAATTTCCATGTGCCAAAATGAACGATTTCTATAATCAagcatattttctgtttttctaaaGTATTCACAGTATATTTAGCATTCGTGCCTTGATCACAGAGATTTGAACAgggaaaaacatatttatttctaAGTAGCGAATACATTTTGCAGTTCACTGGATGAGTATTAGTCTATATTCTAGTATTAATACAATAAACGTGTTCTTAATCATTTTTGTTTATACTGATGCTGCCTGCGTACTCAAACATTATCCGTTAAGTACATCATATATCTGTTCTATCACTTGAAATAAATGTAATCCACCTTGTATTAGAACACCATagtagatatttagaaaaatgctgccTTCAATAatattacgccccattcacacggggcttcagcgtcaacgcttgactgaaggcgtgtctgaagttggggctaaatcgatcgtcatagcagcgtcagccaatgaaattcagtcagcaataggccactgtctagctggtgtatttgcatatagcgatctgattggctgacgcttccgtcggtgcTTGataagttgagctagtcccaacttctgcagcgagcaacgcctctgaagcggcgcctaTTGGATCctcaatgcagttcggcaacgcttgacgtcacccattcaaagtgaataagAAGCGTTGACGCttacgccccgtgtgaatggggtgttacTATGGATGACTaagcagcattcttcaaaatattttcttgtgCATCATATTAAAGGGATGGATGACCCAAAAATCAGGTTCCTCATGTGGTTTCTGTCTTATGtggaatgcaaaagaagatattttgaagaatgctccactaaaaaaaatattcaggaaTGACTCTTTGGagttactcaattttttttacatttagtggctgtaaacaatttatttgggctgaatttaaacaaacaatttaagtagaattgtattaaattacatttgtttgtttgaattcaacacaaataaattgcttgcaccagttttgcagacattatttttttcagtgtgcttaGTCATCCTATAGTAAGAAGGATAAAAGACTATGGAAGTCAGCATTTTTCTAAgcatcttcttttgcgttcaacagagaAACAAACTCATACAGGAtcaaacaagtgaatgatgagcaTATAATGACAGAACTGTAATTTTTGGGTCTCTTTAAGCATTTCACCACAGTGAAGTCAAAGTGATTTAGTTTAAAAGCTGCTCTCGGATGGTGTCTCgcatgtaaatgttttattagttcaCATCTGTGTGTTTGTCATGTCTTTTCTTGTACTTGTGGACCCTGTTTTGCTATTAGCAGTATAATATTTTTTGGTTTTCAGTATTTGCTCGTTCTCAGTGGTTCATGTGATGCTTTCAAAACCGTAATGTGTTCTTATTCTGCCAAATGATGATGCTGTGCAATCCTAGTGTACAATAATATCATGTGCCTTAGGTTAGTAGTGGCGGATATCGGTTGACACGTAAGCAAACAGGAGTTTTGTTTTTGGCCTCACAGACTAATGACAGATTCATTTGGAGTATATATAACCTGACCTGACATTGTAGTGTTGTTTGTACTGTTGACAAAAGACAAACTGAACTTTATGATGGAGATTAAAGTACAATGTCAGTCGGCAAAtgtcactacactgtaaaaatgagcaggtttgtgtattttgtgattcatgttcttatttttccacatttatttatgcttttcaattgcattatgggagattGATCTCTCTGCTAAtgacttttaaccttgaaaagttgggagaagtgacttttatgagcatttttaatagtttaaaatgatatattgtttgggttggtgttttacactacctgacaaaagtcttgttgttgaccCCAgtcgtaagagcaacaaataataacttgacttctagttgatcatttggaaaagtgtcagatttttctgatgaatcatctgttgagctgcatcccaatcatcacaaatactgcagaagagcttgaacccaagattctcatagaaatcagtcaagtttggtgaagaaaaaaatcatggtttggggttacattcagtatgggggcgtgcgagagatctgcagagtggatagcaacatcaacagcctgaggtatcgacatttgtgctgcccattacattacaaaccacaggagagggcaaattcttcagcaggatagcgctccttctcatacttcagccgtcacatcaaagctcctgaaagcaaagtagctcaaggtgcttcaggattggccaacccagtcaccagacatgaacattattgagcatgtctgggataagatgaaagaggaggcattgaagatgaatccaaagagtcttgatgaactctgggagtcctgcaagaacgctttctttgccattccagatgactttattaatatgtgatttaagtcagtgcagagatgtatggatgcagtcctccaagctcatgggagtcagacacaatattcattctgtttccactgcagcaggactttatattctgtactgtgcattatttattttaagtgacaagacttttgcctaagcaaagtcagatcttactctcttaaaatcaaggcatgatcatattttattgtggtaaaattagcgtaatctagaggtctttcatataagccacttctgataccaaatgaacaactaaaagtcaagttattatttgttgtttctcaAACTTTGGTAGGCGACACAACTTTTATCAGGGggtgtatattatgctacaaaaaccttgtaataagcaGCCAGtacatttttctgttattttacagactctttcttatacattatagtatttcaaacaactaaaatatcaataaaagtcactttgttaaactgtaaagttgaatAATCCACATTAAAGTCGACAAAGCAGAAATCaagttcccataatgcaattcactacTGTAAATAAACGCTTGTTGATCACAAAATACACATAACAGCAATTGTTTTAGTGTATTTAACATTATAATGATGTGTTACAGTATGCAAATCTTTCTTTGTTCATGATTGTTTGATTCTAATATGTAGCTTGTGGAGTATTATACCGTCTAAATATTCAAAAGAAAAGTGCCTCGTATTGCAACCATCTACCTTAGATACTCTGTAGATACTAcctatcttttcttttttccattaTAGGTGTTGGTCAAATAGACCGcagactttattattttattttattttttaatcattatttttttttaaatcatggtaACAGTGAATTCTgaattgtaattttattattatactttattttaaaaagtagttttagTTATAGCCTTGCTGTCTATATTTGATATTTCCTTCAACCAAAGGTGACTGAGCATAAATTCATCGATAATTAATACTGATTATTCTGAATTGGGATTCATATAGTGTGTAATGCATACAATCTGGTACAAATAATCTGGAATTCTTCCCTTCatagttttatttacattatttacaccTATTTAATCACTTCAGTCGGGTTCATATGATAGATTGTTCAGTGCATtcgtatatatattgtatataaatgtGAACCGCTTTTATTTGTGATGCATATTTAGCTTGTATAGTGTAAATAGCAGAACCACTTTGACaataaaaagctgtttttaaaccTGTA

Function

GO:

id name namespace
GO:0015817 histidine transport biological_process
GO:0006867 asparagine transport biological_process
GO:0006868 glutamine transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015182 L-asparagine transmembrane transporter activity molecular_function
GO:0015186 L-glutamine transmembrane transporter activity molecular_function
GO:0005290 L-histidine transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121120-3 Predicted to enable L-asparagine transmembrane transporter activity; L-glutamine transmembrane transporter activity; and L-histidine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC38A3 (solute carrier family 38 member 3).

Ensembl:

ensembl_id ENSDART00000128127

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064474 lncRNA downstream 912727 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 912727 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 912798 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 1112790 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 1608898 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00064758 lncRNA upstream 92098 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 113381 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 450656 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1004473 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1004473 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064494 mRNA downstream 3110 53050166 ~ 53144336 (-) False XLOC_033201
TCONS_00064495 mRNA downstream 3779 53052564 ~ 53143667 (-) True XLOC_033201
TCONS_00064493 mRNA downstream 99155 53041180 ~ 53048291 (-) True XLOC_033200
TCONS_00064489 mRNA downstream 351234 52757433 ~ 52796212 (-) False XLOC_033197
TCONS_00064490 mRNA downstream 359233 52757483 ~ 52788213 (-) True XLOC_033197
TCONS_00064498 mRNA upstream 103395 53263854 ~ 53281518 (-) False XLOC_033204
TCONS_00064501 mRNA upstream 113381 53273840 ~ 53282595 (-) False XLOC_033204
TCONS_00064502 mRNA upstream 116788 53277247 ~ 53282572 (-) True XLOC_033204
TCONS_00064503 mRNA upstream 144518 53304977 ~ 53334259 (-) False XLOC_033205
TCONS_00064504 mRNA upstream 145987 53306446 ~ 53329059 (-) False XLOC_033205
TCONS_00064492 other downstream 114335 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 223957 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 1605958 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2390998 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 2399901 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064499 other upstream 113377 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 1345999 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1346646 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 1654462 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 2386676 55547135 ~ 55547270 (-) True XLOC_033236

Expression Profile

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