RNA id: TCONS_00064503


Basic Information

Item Value
RNA id TCONS_00064503
length 3891
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_033205
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53304977 ~ 53334259 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCATTCCTGCGTAAGAGCGCCGCTCGCCCGTGCGCTGCGGCGTGGGGTTTCCCAGGGCAGACTGCAGGGTTACCGCGCCCATCTCCGTCTGATGGCCGGATGAGAGGTGAACTGAACTGGAGAGAAGTGTTCCTTCAAGGAAGGCAACGGGAAGTGGCCACCGACGGACTTATTAGCTGACCAAAGTCTCCAATCGGACATTTATGAGTGCAGCTTTTCCTCGCAGTTGAGATCCCCCCTCGTACAGGCTCATTTCCCGCCCGCCGGAGCGAGTTTTGTCGCTGTGGAAGTGGACTCGGTACTTCTCCCGCTGCTAGTTAGCGAGCTAGCTCGTCTTGTTCGTTGATGCGTGGATTTGACAGCCACACCATCGTTTTTTTCGGTCAATGCCATATAAACAAAGGCCATTTACGACTGAGAACAGATCAGAACGTGTCCCGGCAGTAGGAGAGAGGCAGAGCTTTAGAAGAGGAAAATGAGTGAACTCGACCAGTTACGCCAGGAGGCTGAGCAGCTGAAGAACCAGATCAGAgatgCAAGGAAAGCTTGTGCAGATGCCACACTATCACAGATCACAGCCAACATCGACCCTGTTGGCCGAATCCAGATGCGCACAAGAAGAACACTGCGAGGGCATTTGGCTAAAATCTACGCCATGCACTGGGGCACGGATTCCAGgctGCTTGTCAGTGCTTCCCAGGATGGAAAACTCATTATTTGGGACAGTTATACCACAAATAAGGTCCACGCCATTCCTCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCTCCTTCAGGGAATTACGTCGCTTGCGGAGGCCTGGACAACATCTGCTCCATCTACAGCCTCAAGACTCGTGAGGGGAACGTGCGCGTCAGTCGTGAGCTGGCCGGACACACAGGATACCTCTCTTGCTGCCGCTTCCTTGATGACAACCAGATTGTGACAAGTTCTGGCGACACCACCTGTGCTCTCTGGGACATTGAGACCGGTCAGCAGACGACCACGTTTGCGGGTCACACTGGAGATGTGATGAGTCTGTCTCTGGCTCCAGACACCAGGCTGTTTGTGTCCGGGGCCTGCGACGCCTCCGCTAAACTCTGGGACATCCGTGAGGGCATGTGCAGACAGACCTTCACCGGCCACGAGTCTGACATCAACGCCATCTGTTTCTTCCCGAACGGCAATGCTTTCGCCACTGGCTCTGACGATGCCACCTGCCGTCTGTTTGACCTGCGCGCTGACCAGGAGCTCATGGTTTACTCTCACGACAACATCATCTGCGGTATAACCTCGGTGGCCTTCTCCAAGAGCGGTCGCCTGCTGCTCGCCGGCTACGACGACTTCAACTGCAACGTTTGGGACACCCTAAAGGCCGACCGCGCTGgTGTGCTGGCGGGTCACGATAACAGAGTAAGCTGTCTGGGTGTCACCGATGATGGGATGGCAGTGGCTACAGGGTCCTGGGACAGTTTCCTCAAGATCTGGAACTGAACGCTGAAGGTGCTTTCAATACAACATGTCCGATACAATATCATTTGAACTCCAAAGTTGACTGGAAGACCATTCCAACTTTAGAATGTTAAATTTCACAGCATCGTCAACAACAAAACACCTTATAAAACTGACTGACACCACcatgaaaagaaataaaacttcTAAGGGAAAACAATGCCTTTCCTACACCAAGAAGAGCACAATTTGTTTTATCAcccagcttaaaaaaaaaagaaagaaaagagaaaaaaaagatgaagaaTTCCTGTGGTATCAAATGAATAACTTGCATTCCCTCTCGGACCATTCTGTGTGACCCTGTAAGAGAAAACACAAAACACTATCATCCCACGCTTATGTACCATGTGTCTAGAAAGCAAACGTTGGAGTGTAATTGTACAAATTATTtaactcttattttttttttcctttattctgATAGTTCATCTTCTAGATCTTCTTCccgtctgtttttttgttttttttctgtttagatgcGTTTCTGATTAGTAAAATCTTTTTAATCCTGTTATAAACCATGTGAAAATGAGAAAAGTCATGTATAAAATGCTGAAACTAGACCAGGATGGATGGAAGagcagcttcttttttttttttgttggtttgtttttaaagATGCCAATCATGCGTTTTGTTCTTTTAATGTGCACTAGGTTGCTCTAGAGGTTGTGTAGTTTtcattaatgaggaaaaatgtTTATGCGCCCTCCTGTGAAAGCTTAATCTTCATATATTGTTGGCCCCCAGACGGCGTTCACCTCTGTTTTTTCCCCATCGGCTGGGCGAATAAGAACAGCCATGGCtttctaaaaacaaatgtaatcaTGATCTGTGCAttggttaactttttttttcagtgtgaatcCTGGTCCTTTGTCATtcgagaaaaaaagaaaatgccatAAAAATGCCATATCTCTTTTAAATACTTTGCCATTTCTGAGAGTCCGAGGTACTCGCTTCATTTATCTGCGAATGGCCGTTGTAAATATGGGTATCCGACTTGCACGCGAATGCAGCATTATATCCTAGCTAATGTTTCTTTCCAGTCTCGTCACAGCTTTGTTTGCACAATAAGAAACTTGACTAACGTTTTAAGCGTTAACTAACCAAGCACATGCCGTTAATCACATTGAATGCtaattttaatgtagaaaatgcacaaaaaagtaaaaaaaaaaaggtgaaaaatacacaaaaaatacgATCCTCTCTTTTATTGGATTAAAAACTGTTCAGACTAACCCCTTAGCTTATCTTCCGGTCTTACGTTTCTACTTTCTCCTCGGTTGTTTTGTTTTAAGCTTTTAGCTTTAATTACGATTGTTTTGTCGGGGGTGGGAGGTTGTTTTGGTCGGGCAAGCGGGAGGTTGGGcgggtaatgttttgttttttccagtgGTGTCGGGATTGGTGGTtgaaagaaaagaaggaaaaaaaacaaacaaaacaaaacgtttTCCTTTTCGTTCGTTTGTTTTTAGCCCAGTTCCAGAAAGAGAACAGATAGCCCTGTCTGTGCTTGGAAATACAGTTACTACTATGTGAATGAAATGTTGTACAAATCAATGTCTGAAAATAATGATGATTCTGAACTTTTTTAAGTTAAGCGTTTTATTTCATCTGCCATGAATTAACGTAGTCGCATGCTGTAGAATTTGCTTAAACAGGCGCTGACGTCTTTAGGCCCACTTTCCTCCACTGGGACGACGAAACCGATTACGAAACTGCGAAATTTGTGACTATTGAAGCGTGGGGTTTTTTTTAAGACATGCTGTGCATACATCCTTTACGTTCACTGGCGAAGCTATGCACCTGTGAGGGAGAAACCACATTTATTTCCTGCAGACGACCTGTAAAATATGGCCATGCTTCCTGAAAATGTTCCAAATTTTGCGAAAATGTCCCGCTCGAGGTTTTCCGAAGTCAAAACGTTGCATCGGAAATCACTTTTTGGCTTTTCTTTAAACGTTTTGAAACGGCATCTGACATGGCAGAGTCTTCTGTTCCTTTTCCACTGTAAACAGATGCACTTTCTTTAAtagttgtgactttttttttttctttctttttttctttttttttttaaacaaaaaatcttttgttttttccTTTCTCTGCGATAATGTACAATAATTgtgatgtatttgtgtgtgctgcCACCAGTAAAGATTAATTGCAGTTCAATTAAAATGGATTCCCCTTATTTTCTCTCTTCATTAATAACTGTAGATCTCAGCACTCCCTATCTCACCTTTTGTATTTAATTTCAGTCTGTCGGTGTACCACAGAAAGCTGGATGCAACATAGATACTATATTAAAATGTACTGTTATTTAAGATGTAATAAAACAAGTTTGAGATGTC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:1902624 positive regulation of neutrophil migration biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0031682 G-protein gamma-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2855 Predicted to enable signaling receptor complex adaptor activity. Acts upstream of or within positive regulation of neutrophil migration and posterior lateral line neuromast primordium migration. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in blastomere; female organism; head; and lateral line system. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; autosomal dominant non-syndromic intellectual disability 42; and myelodysplastic syndrome. Orthologous to human GNB1 (G protein subunit beta 1).

Ensembl:

ensembl_id ENSDART00000172465

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064500 lncRNA downstream 22404 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064758 lncRNA downstream 46909 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064474 lncRNA downstream 1070258 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 1070258 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 1070329 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064759 lncRNA upstream 276856 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 830673 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 830673 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00065241 lncRNA upstream 830673 54164932 ~ 54174073 (-) True XLOC_033212
TCONS_00064516 lncRNA upstream 842814 54177073 ~ 54180647 (-) False XLOC_033213
TCONS_00064501 mRNA downstream 22382 53273840 ~ 53282595 (-) False XLOC_033204
TCONS_00064502 mRNA downstream 22405 53277247 ~ 53282572 (-) True XLOC_033204
TCONS_00064498 mRNA downstream 23459 53263854 ~ 53281518 (-) False XLOC_033204
TCONS_00064497 mRNA downstream 100169 53152876 ~ 53204808 (-) True XLOC_033202
TCONS_00064496 mRNA downstream 144518 53147446 ~ 53160459 (-) False XLOC_033202
TCONS_00064506 mRNA upstream 39239 53373498 ~ 53391727 (-) True XLOC_033206
TCONS_00064507 mRNA upstream 59866 53394125 ~ 53426773 (-) True XLOC_033207
TCONS_00064508 mRNA upstream 169014 53503273 ~ 53885514 (-) False XLOC_033208
TCONS_00064509 mRNA upstream 728773 54063032 ~ 54078623 (-) True XLOC_033209
TCONS_00064510 mRNA upstream 758798 54093057 ~ 54111928 (-) False XLOC_033210
TCONS_00064499 other downstream 25047 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 271866 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 381488 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 1763489 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2548529 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064524 other upstream 1172199 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1172846 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 1480662 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 2212876 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 2221003 55555262 ~ 55555396 (-) True XLOC_033237

Expression Profile

//