RNA id: TCONS_00064504


Basic Information

Item Value
RNA id TCONS_00064504
length 2049
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_033205
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53304977 ~ 53334259 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTATAGGAAAGGATAAGACATTGACCAAGAGAAACATTTTCTGGCTGTCAAACACAAGGAGCCTTGTGTGAGCCGCATAAGATCAGAACGTGTCCCGGCAGTAGGAGAGAGGCAGAGCTTTAGAAGAGGAAAATGAGTGAACTCGACCAGTTACGCCAGGAGGCTGAGCAGCTGAAGAACCAGATCAGAgatgCAAGGAAAGCTTGTGCAGATGCCACACTATCACAGATCACAGCCAACATCGACCCTGTTGGCCGAATCCAGATGCGCACAAGAAGAACACTGCGAGGGCATTTGGCTAAAATCTACGCCATGCACTGGGGCACGGATTCCAGgctGCTTGTCAGTGCTTCCCAGGATGGAAAACTCATTATTTGGGACAGTTATACCACAAATAAGGTCCACGCCATTCCTCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCTCCTTCAGGGAATTACGTCGCTTGCGGAGGCCTGGACAACATCTGCTCCATCTACAGCCTCAAGACTCGTGAGGGGAACGTGCGCGTCAGTCGTGAGCTGGCCGGACACACAGGATACCTCTCTTGCTGCCGCTTCCTTGATGACAACCAGATTGTGACAAGTTCTGGCGACACCACCTGTGCTCTCTGGGACATTGAGACCGGTCAGCAGACGACCACGTTTGCGGGTCACACTGGAGATGTGATGAGTCTGTCTCTGGCTCCAGACACCAGGCTGTTTGTGTCCGGGGCCTGCGACGCCTCCGCTAAACTCTGGGACATCCGTGAGGGCATGTGCAGACAGACCTTCACCGGCCACGAGTCTGACATCAACGCCATCTGTTTCTTCCCGAACGGCAATGCTTTCGCCACTGGCTCTGACGATGCCACCTGCCGTCTGTTTGACCTGCGCGCTGACCAGGAGCTCATGGTTTACTCTCACGACAACATCATCTGCGGTATAACCTCGGTGGCCTTCTCCAAGAGCGGTCGCCTGCTGCTCGCCGGCTACGACGACTTCAACTGCAACGTTTGGGACACCCTAAAGGCCGACCGCGCTGgTGTGCTGGCGGGTCACGATAACAGAGTAAGCTGTCTGGGTGTCACCGATGATGGGATGGCAGTGGCTACAGGGTCCTGGGACAGTTTCCTCAAGATCTGGAACTGAACGCTGAAGATATCATTTGAACTCCAAAGTTGACTGGAAGACCATTCCAACTTTAGAATGTTAAATTTCACAGCATCGTCAACAACAAAACACCTTATAAAACTGACTGACACCACcatgaaaagaaataaaacttcTAAGGGAAAACAATGCCTTTCCTACACCAAGAAGAGCACAATTTGTTTTATCAcccagcttaaaaaaaaaagaaagaaaagagaaaaaaaagatgaagaaTTCCTGTGGTATCAAATGAATAACTTGCATTCCCTCTCGGACCATTCTGTGTGACCCTGTAAGAGAAAACACAAAACACTATCATCCCACGCTTATGTACCATGTGTCTAGAAAGCAAACGTTGGAGTGTAATTGTACAAATTATTtaactcttattttttttttcctttattctgATAGTTCATCTTCTAGATCTTCTTCccgtctgtttttttgttttttttctgtttagatgcGTTTCTGATTAGTAAAATCTTTTTAATCCTGTTATAAACCATGTGAAAATGAGAAAAGTCATGTATAAAATGCTGAAACTAGACCAGGATGGATGGAAGagcagcttcttttttttttttgttggtttgtttttaaagATGCCAATCATGCGTTTTGTTCTTTTAATGTGCACTAGGTTGCTCTAGAGGTTGTGTAGTTTtcattaatgaggaaaaatgtTTATGCGCCCTCCTGTGAAAGCTTAATCTTCATATATTGTTGGCCCCCAGACGGCGTTCACCTCTGTTTTTTCCCCATCGGCTGGGCGAATAAGAACAGCCATGGCtttctaaaaacaaatgtaatcaTGATCTGTGCAttggttaactttttttttcagtgtgaatcCTGGTCCTTTGTCATtcgagaaaaaaagaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:1902624 positive regulation of neutrophil migration biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0031682 G-protein gamma-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2855 Predicted to enable signaling receptor complex adaptor activity. Acts upstream of or within positive regulation of neutrophil migration and posterior lateral line neuromast primordium migration. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in blastomere; female organism; head; and lateral line system. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; autosomal dominant non-syndromic intellectual disability 42; and myelodysplastic syndrome. Orthologous to human GNB1 (G protein subunit beta 1).

Ensembl:

ensembl_id ENSDART00000163867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064500 lncRNA downstream 23873 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064758 lncRNA downstream 48378 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064474 lncRNA downstream 1071727 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064759 lncRNA upstream 282056 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 835873 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 835873 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00065241 lncRNA upstream 835873 54164932 ~ 54174073 (-) True XLOC_033212
TCONS_00064516 lncRNA upstream 848014 54177073 ~ 54180647 (-) False XLOC_033213
TCONS_00064501 mRNA downstream 23851 53273840 ~ 53282595 (-) False XLOC_033204
TCONS_00064502 mRNA downstream 23874 53277247 ~ 53282572 (-) True XLOC_033204
TCONS_00064498 mRNA downstream 24928 53263854 ~ 53281518 (-) False XLOC_033204
TCONS_00064497 mRNA downstream 101638 53152876 ~ 53204808 (-) True XLOC_033202
TCONS_00064496 mRNA downstream 145987 53147446 ~ 53160459 (-) False XLOC_033202
TCONS_00064506 mRNA upstream 44439 53373498 ~ 53391727 (-) True XLOC_033206
TCONS_00064507 mRNA upstream 65066 53394125 ~ 53426773 (-) True XLOC_033207
TCONS_00064508 mRNA upstream 174214 53503273 ~ 53885514 (-) False XLOC_033208
TCONS_00064509 mRNA upstream 733973 54063032 ~ 54078623 (-) True XLOC_033209
TCONS_00064510 mRNA upstream 763998 54093057 ~ 54111928 (-) False XLOC_033210
TCONS_00064499 other downstream 26516 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 273335 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 382957 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 1764958 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2549998 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064524 other upstream 1177399 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1178046 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 1485862 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 2218076 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 2226203 55555262 ~ 55555396 (-) True XLOC_033237

Expression Profile

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