RNA id: TCONS_00065242


Basic Information

Item Value
RNA id TCONS_00065242
length 8990
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_033212
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54164932 ~ 54174073 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctctgttttcagatgtctccgttttccttcatccacactgagatggagcagcagcgttttagaatgaaaacggcctcttcagcttTTCCAAaacgcctttttttttttttttttttttttttttttggcgctCAAAAACCATGGcttagtgtggacggatggcgtaaccgtattaaaacgtatgcgttttcaaactaaaacgtattagtgtaaacagggccttggTTTCTTCAATTtcgaaaaccagagcacccggaggaaatccacacacacgGGGAGAACAAAATCAAATTTGTCCATGCTGATCAGTCTCGAAGTTAATTTTAGATGTCAGTTTTAAAAATTGTTCAATTAAATAACCAAAAACCTCACCAGTTTGACTAGAATGAGTGCCATAAAACTTGTTTCAAgtaaatttaataatgaaatctattcatttaaagttaaaggtctcatgaagttcattaaaatgtgtgtttttattagatgtttgacgtaatctcaatcGAAACGCTGAGAAAGTGGAGGGCAGAGCAGCTACTGCCTTTGGGATaaggtggaacaggagattcacatcatagatgtgcagccaacaaatctaagCAACtgagatgctatcatgtcaatatggagcaacatctctgaggaatatttccagtaccttcttAAATCTATCCCGcaaaggattaaggtagttctgaaggcaaaaggaggggtccaacctggtattagtaaggtgttcctaataaagtggccgctgagaaTAAATCCCAAAAATTCTGCATGCAAGACAATTACAAGGAAACTTCTGTTTGGGGttttgaaaggaaaaaaaaatactgaaaccTTGAGGTGAAATACTGGTGTTTATTAGTTGGCACATTTATATTACATTCTCATACTGGTTGATTTCACAATCTCAAAATGAAAGAGCAAAATATTCCAGTGAAAAGTACAGCTGTGAGACGAAAACATCACAGCGTTTGTCGTATTTCATTCCAGAAACCCATTGAAACCAATTACAACACGTGTACAAGGATGAACGGTTTTAAAACGCGGCAAAATAAAACGTGATCCACTACAGTTTACATTCAGAGTCACAAGCAGGGCGAACTTTAAGGTGCTTTCTGCAAGATGTCCGTCAAGGATATGGGTATTTCACATCTTTTTATATAAATCAAATGCAGCAGGTTTGATTTCACATCCTTGGTTTTTGTTTTCCGTAGTATGACTGTGCTTCGAGAATCATTCACAACAATGCTGTTGGTTACATCAGCGATTCCCAagcctgttcctgaaggcacaccaagaGTATTTTGGGTGTCTCTCTTATCTGATCCATACATTTCAATGGTTtaattaggaagaggttgaaaactgttggtgtgccttcaggaacaggctTGGGAAACACTGGGTTACATAACCACATCAGTGCAGCCATGTAATAGTTCATATGCTGCTGTTGTGCCATTGTAAAATAAAGAATACATCAGTATGGCCGTCATCACATATCAGTCAAGAAAACGATTCAGATTAGCGATTACATGCTACACTAAAAGTAAAAGAGAGACTTGCAATCAGATCGATGACATTAGTGTTGATAGGTGTTAATCAAAGGCATGTAAACATAAATCACCAGCGAACTTGATCTCGAGTTCATCACTTCTCTGCAGTCAGACTAACCATGAAAAGCATCACAAGCATACTTTATAAAGATCTTAAATGCACTTAAATCTCCCAGAGGAGCAACAAAGAGTCGAGTCTTGAGGAAATAGAACAGCCGATCTCACATGTACCATAGCTATACGTTGAATTGAACCATTCGCCTTTGATCTGTACAAGACACCAATACATCTGGCTAACTACAGTGGCTCAGGATTCACAGTAATGCGCCAAACGCTGCTTTCAGAGCGTGCAGTTCGGCTTCGAAGATGTATCAGACATTTCATCAGGGGAAATGTAAGCTAAAACCAAATCTGTGCTTGATCTAAATCTTCCAACGTCCAGGGATAATAGATGGTTAAACAAGCAAATACAGTCCAAAGTGAAGGCCTTGATTATGAGAATATGAATGGGCAAGTCTGAGAAAACAAGGGCTTACAAAAGATTCAGATTACCATTAAACCGTGATATGAAAACTGCAAGTTTTGTGGACATTTCGTTAAACAAAAACCTAATAATATGGTATATAAACATCTCTAAGTGTTATTAAAGCGCCAATATGGCattaacaaaatgtaaacatcAGCTAATGGCTAAAACGAGCATGGAATCCATTTTACTTTCTTAATGCGATGACTTTTCTGTATATCGCTCAAGAAAATGGCTGTGATTTTTGTATGGAATAACATGGACTGAAATTATCCATggtcaataattaattaaacgcattaagaaggtaaaaaaaaagtcaattttgaTCTTGGTTTTTTATGAGGATTAGTAAAAACCTCCATGTTAAATTCGAAGCAAGCCTTCTAGTTTGTGATTTCATGGCCCACCCTATATGCTGTGGCACTTAAAAAGacggttcacccaaaattgacaATTCAGACATCGTTTATTCatactccacttgttccaaacctgagtttcttctgtTGAAAGAAAGTTTGGAAGCACTTGTGAGTATTATCCAAGAGTGAAAAATTGTTGTTAATGTACTCAACCTTCAAGACATCCAAAATGTACactccaacaaaaaaaaaaaaaaaaggtttttgttgctttttggGGAACAACTTAACAGTTTTATATTCGACTGACATACTTCCGTGAAAACAATCGTCACCTAAtttgttttgtgttgggacaacattatggattgtgtggaacccagaattttttacagtttaggtGGCTTTTTCTTCAGTCAAATATTCattgtccttcggcttagttccttatttatttaggttatttattttaagttacttaatttatttagtttatatatataatttagtttattcaattcacccatagcatgtgtctttggactgtggtggaaacccacgccaacacgaggagaagatgcaaactccatatagaaatgcCAACAGGACTAGCTAGGACtcaaacctgtgaccttcttgctgtgaggtgacagtgctaaccactgagacaccatcTTTTCTATTTAGTTGAAAGTCAACAgcacttaaattaaaataaataaataaatgaagcgaAACTAAATGAATACTCAGGGCTCCTGACAGTACATTATGGGCTTTTGTTCTTACATTCACAAGTCGTTAAGATTCTAGCATTAGCCACTGTAATCATTTAGTTTAGCTTGTATTACATTAGTTTGTTTTTGACtctctaataactcattttcACTGAGCGGTTCAGCAACACAAGCATTAATTTCGGTTTCGACTTCAGAAATGGCACttaccacttttttttttgtaaaggtaCAGTAATGATGTGGTAAATACACTTATGAAAGGGTCCCAAAAAAGAATGAAGCTAGACTCCACTGAACGCCATCCACTTGTTAAGTATGCtgtcacgcaaagcggcttctgggtccaagcgctctagaagactgtatggggagactcaacaaatggtaataagaaatgtttaaaaagcgACGTAATattttcgaaaatcacgatgacaatatatatatttatttaatgcctacaaatgcgtaTGAGTAATTGTCATCACAGGACAGTGAGGGTGAGGTGGCAAGTcacgcaccaagtgacctgcattttggcagtatttccggtttcgagcgaacgagaagggagacgtggtaaatacgaactagaggtctgcattcctgctgcTGTACCGAGGGAGTCGACTAGATTACTTGCGGTGCgagaataaatttccgaataaagcagAAGCGGTCGGTAACTatggtgtaatttgaaagggagcaGGCGCGCGGACtagcaatataataataataataatatcgctcccgagcgagCGCACATTCGCGTGTGTATGAAAGAACGTCCTGTGCAGATCTCtaatacaaacaagacaaacaggtgaccgcaaacctaaggtcgcatatacggtattcagtttcaAAATGGTTTAgacacaagccaacagtttggtgatgctgtctgagccttgtgtcaaaaatgtttttatgatgCACgataataccggataccggggcaaaatagggaggaggttagACGGTAGCGAAATTTGGATACCGCCTAAgcctaatatatttatatatatatatatttacgcctaatatccaatggccagaaagtgattcattttttataaattgttaaaatattgatgtctgtgatgcagcagagactgttgtgtacaccatgtttttatataaaattcactttaatgtgcctaaaaagtggtcataaacaaatattttctcaattcaaacgaCTAGAccaggaaacagtattccatacgtcacgacTTAGACGGATTAATTTACAGATCATCATCATTTGCACAACACAGGAAgctccatttttaaatacacggCCAAAATACGACACCAATAAAACAATGACGGCATGCAGAAATCAGGAACAGGATCTGCTGCatgtcctccattgttgtttaTGGTATCGATCATATCATATCGCATCTATAAACGCATATAAATTGTAATATGTGTAGCTTCCTCACAATTTGCACGTAGTTGCTTTGCATCTAAAAAATAATAGACAATGTGAACGGACTGTATGGCTTTCTACTTTGAGCGAGAATGGCGTGGATTGTAACTTTCGTGCGTAAACAATGCCTACAAAGTAGCGGTACGGTTTTATGTGACTACTATACCGCTCAGTTGAAATGAGGTAAAAATGTCAGTTGagcattgacttgcattatataAATCACCAGAGTTTTAGCTACAAACCTTTAACAGGCACCTAGTAAAGGCCACCTAGTTGATCTTTTGTCCATaggattatcattattattttaatagcttATTACTATATTTCATAATCGAGTCGTGTCAGTATTTTATTCAATACAAGATGTAggccaaaaaaattattttcaaggaatgcaccttaaagggttaatgctCAACTGAAGCAAAAAGAAGTCACCTATATCTTAGATAGCATGAGTGTGAGTACATTTGTTAAAAAAcaccatttttgggtgaactatccctttaaagcaacGGCTTCCaaactgtcctgcagagtttagctccaactttactAAACACGCCAACCTGGAAGCTTCTAGTACGACTAATAAGACTTTTAATTAGCTGAGCAGATGAGTTTAACTGGAGTCGGAACTAAACATTCAGGACAGGGTTTGACTCCTGCTTTATAGTCtacatcagtggtcaccaaactggttcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctgaacaagctaatcaagctcttacttggtatacttgaaacacccaggcaggtgtgtagaggcaagttagagctaaaccctgcagggacaccggccctccaggaccaggattggtgacccctggtctacatgGTTACAGCAACCGATTTTCCTTCATTGAAATGTACTGCCTAGCAGAGCCATTTGAAAGTGTTCGGATCATGAAATTAAAGACTATTTATAACTATAATGTGTTTGCTGTTAAAATATGATGTGCTGAAAAAACTATTGAAGTGCAGTAAAAAGTAAATCAGATCAGTTTGATTTACAGGTGAATcaattctgtttaaaaaaagtgcAGTTCAACCAATTCTGTCGCAATTAAATTGTGCTAGTGGCTTAAAAGTTTGTaatgttaaatacaaaaaaaaaaacccacacattaaaaataaagggaTCTGGATTAAAAGGTGTGCGCTTGTAGAATTACGCTCCAGTCTAATCAGGTACTAGAATAAATTAAAGATGCTTTTTGGAGGCCCATATGTTATTTACAAGATGACCAGAAActagagaagaagaaaaaaaacgggCAAGTTCAGAGCAACGATTTAACACGAAGTACAGGTTAAACATTCATCGCATCACACAACCTCatcataacacaaataaataccaGTGTTCATGCAAAACGATCACAGTTCCACCATTCAGACATTTCCTCCCACAACCCGCAGAAAGAGAACCAACGAAAAACGcgttcacacacacgcacgcacgcagtatggcaagccgttttgacaTTTAATCAATAACCcctactagtatctatttaaaaAAGTAGTGCTTATTTTTTAGATGCTAGTCTCTTTTCCATTAAGTACTGGTACtttttcattagatactagtgcttattcgTTAGATGCCTATTCTTTAGATCAGTAGTTCTTTAACTGTGGTACCTGTACCACAAGTGGTAagtgggcttccttctagtggtatgcggaggaatatgtcatatgtacatgctacatatttttcaaaaattatcaaaaatgatttatatattaatgtgatgacatatagcctatatttatgaggtccaagcaacatccccaggttttgatgaataggcaaatatgttaatactttacatttaagtacaggagtttttttttttttttttactttttaggaaCAGTAAtctaccatttttaacttttaaaagctcaTTTCAATATAAACATTGacgttttattgtttgtttgtttgtttttttacatataagcacagtacagtgttaatgttcaaagtatttataatgtttaaagtggctgataataataaatattcttattattaggAATTAATCtaccatgtttttgaactgtacagagctgtagcttctttactgggcctactatgtTACTATATTTCAATACTACTCATTATGGTGAGTttcttacttgtttgtttgtttatttatttgtttatttggcagggacagtgtacattaattagcatttctgcaaatgcaccagaattagcaagaaggctatttttcatctgttgtccctgGACAACATAGAAAgcaatacaaaaattatacaatCGATCAAGCAGTTAAGAAGCACTAAAATAGACATGGTTATGTAGATCTTAATAACAAGAGAGACtactttttttctgaggtggtccttggtaaaaaaagtttgagatccCCTGCTTTACTAATACTAGTGCCTATTCATTAAATACTCGTGTTTATtctttagatactagtgctttatgaaaatatactagtgcttactcattagacactgttttttattagatactagtactcattAAGAAGATATTAGTACATATTTTTTACTACTTACTACTTATACATTatgtactagtacttattaaataaatactagtaATTAGTAACTATTCTGCTGTTACTagtaacaaatttaaaaaaattccaTTGATTTCTATGGGATCTGTCATTGAGATATCAAATATTTAGTTTTGACTAGTGTATTCCAGCTGGGGCTAGTACATATTTTAATGTACTAGTAGTTATTCATTAGTACTAGTATTTATTTGACACTAGTATCTTTTATAACTATTACTAGTAACAATTCTTATTTTACTAGTCAGTTTTGCTTTGTTGCTAGTCCAAATGAAAGAGTTCAACTAAACATTTTACTAGTAAAATAAACTACCATTTACTAGTAACATTTCAAACAAATACtagtatttaataaatgtgtacCTAGTAccttttaaataagttttagtaTCTATTTCATAAGTACTAATACCTAATGATTAACTACTAGTACATAAAAAGATGTACTATTTCCAGCTGGAATACACAAGTCAAAACGGAATAGTTGATATCTCAACGACAGATCCCATAAAAATCAATGGAAAAAATGTAACTTTGTTACTAGTAACAACAGAATAGTAactagtcactattaaaataagcacaagtatctaataaataagtactagtatctaataaataagcactagtatctaataaacaagcactagtatctaataaataagcacTAGCATCTAAtaaataagcactagtatcttATAAacaagcactagtatctaataaataagcactagtatctatttaataagtactagtaaaaatgaataagtactagtacctaCTAAATAGATACTAGTAACTAATAAGTAATAGTATCTATTGAagaagtactagtatctaatacataagtactagtatctatttaataagtactagtaaaaatgaataagtactagtacctaCTAAATAGATACTAGAAACTAATAAGTAATAGTATCTATTGAagaagcactagtatctaataaataaacactagtatctatttaatatgtactagtaaaaatgaataagtactagtacctactaaatagatactagtaactaaaaagtaatagtATCTATTAAagaagtactagtatctaatacataagtactagtatctatttaataggtactagtatctaataaatgaGAACTACTACCTAAAGAATAGACACTAGTATCTAACAAATAtgcactagtatctaataaataagtactagtccTTGGTGGAAAatatactagtatcttaaaaataagAACTAGTAACTTGAAAACAGATAGTACTACGGGTTAttgattaaatttaaaatgtggcTCGCCATACACGCAGAGGAAATCGAATGTGTAAAAATACTGAAAGCCACATGCTGACGCACCATGTGTATGTTTTATACCTCACAACAGTAAAAAGTAATTCTTGCATTCGTTTAATCTCACACATGAGCCGCAGAGCGGGCACTAAAAGGGACGAAAGAGGGTCTTCATGCAACAGTCCGCATGAAAGGAGAATTTAAACATGGAGGGAAAAAAAAGCGCAGAAGTATCACATTTACAAAACGCATCGAATATTCCACCGACTCTTGATGTCTGGGCCACCTTCTTGGCGCTCAAAAGGCCTTGGCAAACCATTGTGtctatttctttttgtttgatttttttttgtgagaaagaaaaataataagtATGGAGCAATGAAAGTAAGAGCAAGAGTGGTGGAAGCATCCG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064759 lncRNA downstream 474314 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00064500 lncRNA downstream 882359 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064758 lncRNA downstream 906864 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064475 lncRNA downstream 1930213 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064516 lncRNA upstream 3000 54177073 ~ 54180647 (-) False XLOC_033213
TCONS_00065243 lncRNA upstream 323731 54497804 ~ 54522947 (-) False XLOC_033220
TCONS_00065244 lncRNA upstream 323731 54497804 ~ 54523253 (-) False XLOC_033220
TCONS_00065245 lncRNA upstream 323731 54497804 ~ 54523451 (-) False XLOC_033220
TCONS_00065246 lncRNA upstream 329717 54503790 ~ 54522300 (-) False XLOC_033220
TCONS_00064512 mRNA downstream 38469 54117004 ~ 54126463 (-) False XLOC_033211
TCONS_00064513 mRNA downstream 43897 54117344 ~ 54121035 (-) True XLOC_033211
TCONS_00064510 mRNA downstream 53004 54093057 ~ 54111928 (-) False XLOC_033210
TCONS_00064511 mRNA downstream 57663 54093505 ~ 54107269 (-) True XLOC_033210
TCONS_00064509 mRNA downstream 86309 54063032 ~ 54078623 (-) True XLOC_033209
TCONS_00064514 mRNA upstream 623 54174696 ~ 54180699 (-) False XLOC_033213
TCONS_00064515 mRNA upstream 709 54174782 ~ 54179860 (-) False XLOC_033213
TCONS_00064517 mRNA upstream 3389 54177462 ~ 54180516 (-) True XLOC_033213
TCONS_00064518 mRNA upstream 106292 54280365 ~ 54290227 (-) True XLOC_033214
TCONS_00064519 mRNA upstream 150935 54325008 ~ 54348568 (-) True XLOC_033215
TCONS_00064499 other downstream 885002 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1131821 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 1241443 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 2623444 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 3408484 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064524 other upstream 332385 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 333032 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 640848 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 1373062 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 1381189 55555262 ~ 55555396 (-) True XLOC_033237

Expression Profile

//