RNA id: TCONS_00065248


Basic Information

Item Value
RNA id TCONS_00065248
length 705
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_033222
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54747948 ~ 54754115 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGCTTGCATGCTAATAATGCTGTGGTTTTGAAAAGTTGTGCAGTTCATAGTAAAGTGTGACACAAACTAGTGCTGTTAAAACCTTTATTGAAACTTGTAACTGTAATGAAACATGACAAATTGATACACACCCTTAACGCAACAACCACAATGTTTGTAAAGTTGTACAGACGTCAACGAGCAATGGAAACTTCTTAGAATGAAttactggctgactgactgagaGATGCTGTATGTGATATCATATTTATATGGTCAGATAAACATATCACTTGctatataaaacattatatatatcaTGTTAAACTTGCACAAACAGCCCGTAACACTCGTACAAATCATTTTTACAATGATCCTAAATCCTTTCAGAACATAATAAACACAATTCCATATTCACTAACAACTGAATGAAAATACATTGTTGAGAAACAGAAACTAATgtatgcagtgtttgtgtttctcAACATAAAGCATCTACCGCCCCGAGAGAAATAAAAGCTCATTCTTACCATTACTTCTGCAAGACTTAACCAAAATTAATAAGCAATGCAATTTagatgcattttttaaagtgcttCTCAGTCAATAACCAGATGAGATTTGAAAGCTGCTGACGTCACTTCATTCACAAAGGACTTCTTTTTCATGCCATTCTTTCTTGGAAAGACCAGAGTTCAGGAAACCCACCAGCTGCGGCAGAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065245 lncRNA downstream 224497 54497804 ~ 54523451 (-) False XLOC_033220
TCONS_00065244 lncRNA downstream 224695 54497804 ~ 54523253 (-) False XLOC_033220
TCONS_00065243 lncRNA downstream 225001 54497804 ~ 54522947 (-) False XLOC_033220
TCONS_00065246 lncRNA downstream 225648 54503790 ~ 54522300 (-) False XLOC_033220
TCONS_00065247 lncRNA downstream 226499 54506999 ~ 54521449 (-) False XLOC_033220
TCONS_00064760 lncRNA upstream 64383 54818498 ~ 54826011 (-) True XLOC_033224
TCONS_00064761 lncRNA upstream 87281 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00065250 lncRNA upstream 122062 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00065251 lncRNA upstream 127609 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065252 lncRNA upstream 268721 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00064523 mRNA downstream 261538 54481941 ~ 54486410 (-) True XLOC_033219
TCONS_00064522 mRNA downstream 282571 54459413 ~ 54465377 (-) True XLOC_033218
TCONS_00064521 mRNA downstream 303019 54438355 ~ 54444929 (-) True XLOC_033217
TCONS_00064520 mRNA downstream 313953 54430413 ~ 54433995 (-) True XLOC_033216
TCONS_00064519 mRNA downstream 399380 54325008 ~ 54348568 (-) True XLOC_033215
TCONS_00064526 mRNA upstream 7026 54761141 ~ 54796072 (-) True XLOC_033223
TCONS_00064528 mRNA upstream 51021 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064527 mRNA upstream 51021 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064529 mRNA upstream 52821 54806936 ~ 54826061 (-) False XLOC_033224
TCONS_00064530 mRNA upstream 53210 54807325 ~ 54816567 (-) False XLOC_033224
TCONS_00064525 other downstream 240770 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 241362 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1468018 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1714837 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 1824459 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064531 other upstream 60806 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 793020 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 801147 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 896004 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1784894 56539009 ~ 56539125 (-) True XLOC_033247