RNA id: TCONS_00064527



Basic Information


Item Value
RNA id TCONS_00064527
length 2612
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_033224
representative False

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54805136 ~ 54826061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGCGCACTCTTATAACACTTATAACAGATTTTGTTTGTCAGAGTCTTATGGTGGCTAAAGCGAAGGAGGAGTTAGAACAAGAGCTGGCAGATAAGGAAGACGAGAAGGAGAAATATCTTTCTGAGAAAGCTCCTCAGCTGCAGACTAGTGGGATGTCCTTTGCTGAGCTACAGGAGCTGTGTCGAGAACTACATGCTAAAATCGATGTGGTGGATGAAGAGCGATACGACATTGAGGCGAAAGTACTTCACAACACAAGAGAAATTAAGGATCTGAACATCAAAGTCCTGGATCTGAGGGGTAAATTCAAACGCCCCACCCTGAGGAGAGTCCGGGTGTCGGCCGACGCCATCCTGCGCTCCCTGCTGGGCTCCAAACACAAGGTGTCCATGGACCTCAGAGCAAACCTTAAATCTGTCAAGAAGGAAGACACAGAGAAGGAAAAGACGGTGGAGGTCAGTGACTGGAGGAAGAATGTGGAGGCCATGTCtggaatggaaggaaggaagaaaatgTTTGATGCAGCACAATAAACATCTGATCAAAATCAGCACCTGCGAGAAACCAGAGAAGGATGAAGGAAAAAAGCGGAGACAATGCTAATTCAAAATGCATTATCTAATATCGAAAGTCATTTATCTACTTTTGTTCAAGTGCCTCAAATCCATATAAGAAATAGAAACACATATACATACTTTCTTTAAATACAAAGATATTTGCCAGTGTGTTCAGTAAACTACAAAAAAGTAGGCCTATTTAAGTTCACGTTACACTATTAGTGTTGGTTGTGTCAATAAATTGTGTAATCTGCAGATATTCGCCATTTCATGTGAATATTTGTTCTGTCTGCACTACACATGATTATTAATGTCATGATTAGCAATGATAAAGCAAATTAAATGGAAATCCAAtgcactaataaaaatataaggtAGTGATAAggttcatcagaagaaaaaagTCATTACTGTAAATCGATTTGTCATTTCATGTGAATGTTTGTACTGTATCCTCCTCTACAGTCAAATATTTGATAAGCAGTTTAGTATGAGAATAATAATCTTACAGGAGTTTAGTcactaataaaatgaataatacatataaatgatAAGCAAATAAACCAAGTggtactcactgcagagccatttgggcagagctgagctccagaaaGGGGGAGCTTAAGCTCTAGCTCCTCCTTCCTTGCGCTTCTTCTACATGTGATGTCACACTGTGGGTTGGGGTgagtgtacgcattaaaacagcttataggaggaggagttggagctcaagctcccccttgctggagcttAAGTGGCTCTGCTGCAAGCAGTGTCTCAAATAAActgtcttcacacacacacacacacaaaaaaaaagtctacatTCTGAAGAATGTTCTGGAAAATGGTGTCTTTTAAGGCCTAAGCAGTTTAGTAAGAgttaaataagttattattatagCAGTTTAGTGACTAATAAAATGATGAATACTTATAATGATAAGCAAATACACTGTAAACTGtgtcttcattaaaaaaaaaataaataaataaaatcaattaaataaaaaaaacgagcctcggctcagttggcgtttctgtgtggagtttgcatgttctccctgcgtttgcttgggtttcctccgggtgctctggttttccccacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtataagtgtgtgtgagaatgtgtgagtggatgtttcccagggatgggttgcggctggaagggcatccgctacgtaaaaacgtgctggataagttggcgggttattctgctgtggcgacccgggattaataaagagactaagccgaaaagacaatgaaagaatgaatgaattaaaaatatttttaaaatctccaTTTGGAAGtaggtcaaaaccacaagtgtaTACAgtatgcaactgcacaacaataaTGGTGATTGAAAAGTATATGTTTTGTTGGGCCAAAGCTCATTTTTGACGTCAGTTGCAGGTCAGagggaggggggtgggggggggcgCAAATCGAGACCCAGCAGTTTGAGACCTAGTTAACACTGAATTTATAACAGCTAAGAACGCTAATAACATGATGCAGAGCAAACTgccgacatttaaaaaaaattattattactgcttgttcaaactacttaattaaaatgagctaaaacaacttgatttttaaggttttttgaggacaacttaattgttttatgtccaatcaACTTAAATGTGTAACAATGATGAagtaacttaatctatttgtgttaggacaacataaggaagtgtgtggaaccctgcattttttttacagtgtatgttctGGAAAACAACTTAAGTGATTTAAAGTGATTATATTTTCTCAAAGTGTTACAGATGTGCatgtaatattgtatttttagttTGAGCACTAAGAAATAAAACCAGCAGGCGATGAAGAAACCGGTGGTCATACTCTTTTCGGTTGCTAGAGGGCAGTGTCCACTACACAATTAATGTACAGCCTAtcaaaagtctttgttttataaactgCAGGACTTATTTGAAGCATCCAGAACCACTCATACAATAAAGAGGTG

Function


GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-37 Acts upstream of or within heart development. Predicted to be part of troponin complex. Is expressed in cardiovascular system; lateral plate mesoderm; and musculature system. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

Ensembl:

ensembl_id ENSDART00000007498

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00065248 lncRNA downstream 51021 54747948 ~ 54754115 (-) False XLOC_033222
TCONS_00065249 lncRNA downstream 51263 54750932 ~ 54753873 (-) True XLOC_033222
TCONS_00065245 lncRNA downstream 281685 54497804 ~ 54523451 (-) False XLOC_033220
TCONS_00065244 lncRNA downstream 281883 54497804 ~ 54523253 (-) False XLOC_033220
TCONS_00064760 lncRNA upstream 2612 54818498 ~ 54826011 (-) True XLOC_033224
TCONS_00064761 lncRNA upstream 25510 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00065250 lncRNA upstream 60291 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00065251 lncRNA upstream 65838 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065252 lncRNA upstream 206950 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00064526 mRNA downstream 9064 54761141 ~ 54796072 (-) True XLOC_033223
TCONS_00064523 mRNA downstream 318726 54481941 ~ 54486410 (-) True XLOC_033219
TCONS_00064522 mRNA downstream 339759 54459413 ~ 54465377 (-) True XLOC_033218
TCONS_00064521 mRNA downstream 360207 54438355 ~ 54444929 (-) True XLOC_033217
TCONS_00064520 mRNA downstream 371141 54430413 ~ 54433995 (-) True XLOC_033216
TCONS_00064532 mRNA upstream 22383 54838269 ~ 54845622 (-) False XLOC_033226
TCONS_00064533 mRNA upstream 22625 54838511 ~ 54845083 (-) False XLOC_033226
TCONS_00064534 mRNA upstream 405604 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064535 mRNA upstream 471937 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064536 mRNA upstream 483625 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064525 other downstream 297958 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 298550 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1525206 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1772025 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 1881647 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064542 other upstream 731249 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 739376 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 834233 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1723123 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 2447624 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile


Expression of TCONS_00064527 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.
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Expression of TCONS_00064527 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.