RNA id: TCONS_00064760


Basic Information

Item Value
RNA id TCONS_00064760
length 874
lncRNA type sense_over
GC content 0.33
exon number 2
gene id XLOC_033224
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54805136 ~ 54826061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCAAGAAGATTTCTCTGACCATCCGAGCACTACAAGGTTGAAGCACCATTGTAAAGATGCCCGAGTGAGTATATtgtgtctgtgttttgttttgttttttctgttgttcGTCATCCTAGATATCTTACAACCCCGTCGAAAAACACATGTGCTCTATTCTCGGATTCACCGGCTGTGTCCTCTTAACTCAAGGCCTGTGTTAATGAAGGCGGATTAGGAGGACAACACAGTCAGAGAGAGCGTGAGAGAGCcgtgaaaatctgaaatatataaataaacagttttgatataaaaatcaaaacaaattgaAGATTCTGCACATTTTCAATAGGTCACTAATTAGGTGAATTGGCAATTCTAAGAGATTGTTTgtgattgtattttttattattcgtGTAATCaaacttaattaaaaattttagcaaaaacatttgaaattaaGTTTAAGCAACTAAAGAAATTGCAAGTCACACATAAAAAAGTAGCAAAGTAGCATAGTAAGCAAGGGAgtgctgtcattgttcaaaaatgaaccaaagtgaatataaaaccttcagctcagtaaagcaggctaggcgaaatagcgctatttactgatgttttgttgttaaactgaattaaaaataaataaataaataaataaaataaaataaattgacattATCGATGcagtaaaaggtcccttatgaaactgaaaatagtcacaacaAACTATCTCTGAacgattttagtggctgaacaacacttctgtgcatgtaacccattcataaaacaacacaatgtacatcagctttgcgtgaacaaaagttttttttttagtttttttttttgctcacgttttcaGTCAACGTTTAATGCCTCGCAACTAAATA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065248 lncRNA downstream 64383 54747948 ~ 54754115 (-) False XLOC_033222
TCONS_00065249 lncRNA downstream 64625 54750932 ~ 54753873 (-) True XLOC_033222
TCONS_00065245 lncRNA downstream 295047 54497804 ~ 54523451 (-) False XLOC_033220
TCONS_00065244 lncRNA downstream 295245 54497804 ~ 54523253 (-) False XLOC_033220
TCONS_00065243 lncRNA downstream 295551 54497804 ~ 54522947 (-) False XLOC_033220
TCONS_00064761 lncRNA upstream 15385 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00065250 lncRNA upstream 50166 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00065251 lncRNA upstream 55713 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065252 lncRNA upstream 196825 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065253 lncRNA upstream 447995 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00064530 mRNA downstream 1931 54807325 ~ 54816567 (-) False XLOC_033224
TCONS_00064528 mRNA downstream 2612 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064527 mRNA downstream 2612 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064526 mRNA downstream 22426 54761141 ~ 54796072 (-) True XLOC_033223
TCONS_00064523 mRNA downstream 332088 54481941 ~ 54486410 (-) True XLOC_033219
TCONS_00064532 mRNA upstream 12258 54838269 ~ 54845622 (-) False XLOC_033226
TCONS_00064533 mRNA upstream 12500 54838511 ~ 54845083 (-) False XLOC_033226
TCONS_00064534 mRNA upstream 395479 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064535 mRNA upstream 461812 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064536 mRNA upstream 473500 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064531 other downstream 3461 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 311320 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 311912 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1538568 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1785387 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064542 other upstream 721124 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 729251 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 824108 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1712998 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 2437499 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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