RNA id: TCONS_00064761


Basic Information

Item Value
RNA id TCONS_00064761
length 569
lncRNA type sense_over
GC content 0.43
exon number 2
gene id XLOC_033226
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54838269 ~ 54845622 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGTTTAAGGTTGTGCTCCAGTTTTTCTTACTCAAGACAACTTAAAGATGCTTTGCTGAATAAAGTTACCTAGAGCACCAGAGGAGAGCTTAATATCTTAAACTTTTCAGATGCATTACACTTTTGAACaggaatgatgttccaggatcaacatataGAGGTTATAACACCCACATATATAACACCCACCCAGCTCATATGTATATTTTACCAGCTATTAAACTCAGTTTGTATAAATATAATCCGCTCCTTCATACTTACTAACTCTTTCTCTATGTCTGTTGAGCACAGTGGTGTGCAGAAAGAATCTGGACAGTACAACAGTAGCTGTGCATCAGGATGAGATCTACTGCAAATCCTGCTATGGCAAGAAATATGGGCCAAAAGGCTACGGCTTCGGTGGAGGAGCAGGAACTCTGAGCATGGACGGGGGTGAAGCTCTGGGAATCAAACCGGCTGGAGAAACATCTCATCGTCCGACCAACAACCCCAACCCATCAAAATTTGCACAGAAGCTCGGCGGTTCAGATGTTTGTCCTCGCTGTGGAAATGCTGTTTATGCCGCAG

Function

GO:

id name namespace
GO:0045214 sarcomere organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0060537 muscle tissue development biological_process
GO:0005634 nucleus cellular_component
GO:0030018 Z disc cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0042805 actinin binding molecular_function
GO:0008307 structural constituent of muscle molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064760 lncRNA downstream 15385 54818498 ~ 54826011 (-) True XLOC_033224
TCONS_00065248 lncRNA downstream 87281 54747948 ~ 54754115 (-) False XLOC_033222
TCONS_00065249 lncRNA downstream 87523 54750932 ~ 54753873 (-) True XLOC_033222
TCONS_00065245 lncRNA downstream 317945 54497804 ~ 54523451 (-) False XLOC_033220
TCONS_00065244 lncRNA downstream 318143 54497804 ~ 54523253 (-) False XLOC_033220
TCONS_00065250 lncRNA upstream 32748 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00065251 lncRNA upstream 38295 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065252 lncRNA upstream 179407 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065253 lncRNA upstream 430577 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00064545 lncRNA upstream 971328 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00064529 mRNA downstream 15335 54806936 ~ 54826061 (-) False XLOC_033224
TCONS_00064530 mRNA downstream 24829 54807325 ~ 54816567 (-) False XLOC_033224
TCONS_00064528 mRNA downstream 25510 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064527 mRNA downstream 25510 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064526 mRNA downstream 45324 54761141 ~ 54796072 (-) True XLOC_033223
TCONS_00064534 mRNA upstream 378061 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064535 mRNA upstream 444394 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064536 mRNA upstream 456082 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064537 mRNA upstream 484480 55327909 ~ 55347616 (-) False XLOC_033233
TCONS_00064538 mRNA upstream 489031 55332460 ~ 55354004 (-) True XLOC_033233
TCONS_00064531 other downstream 26359 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 334218 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 334810 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1561466 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1808285 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064542 other upstream 703706 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 711833 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 806690 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1695580 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 2420081 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

//