RNA id: TCONS_00065250


Basic Information

Item Value
RNA id TCONS_00065250
length 458
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_033227
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54876177 ~ 54886711 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGCATCCGGCTTTAACAGCTCCCTACATAGTGTTCCCTGCTCCCTATTCCCTGAGCAGAGAATACCCACTGAAGGTCACTTCACTTGGGAACATGCATTTAATTTGAACAACCTGCAACTTCACCATCACCACTGGGAGAGAGGAAACTCCAGTCATGTATTTCAGAGGAGTCTGAGggGGCTTTGGAGaggtgaaggtcacgtgacatacatccTTACATCACCTTTGTACAGACACAGTAGGTTTAGGAGTGAGCGCTGGCTTTGTATTCTTCTGTTTGGATTAGTTTATAGCAGggCCACTTTTGTCCTCTTCCCCTGCAGGATTTATTGTTTTTGGATGATTTTGTTCTTATAAATGACCTTTTGTGCTATTTGCTGTTATCTTATTCTTCTTCATTGTTACAACGTTctgtttatttttgatttttgtaTGATAAATGATTCTCTTTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064761 lncRNA downstream 32748 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00064760 lncRNA downstream 50166 54818498 ~ 54826011 (-) True XLOC_033224
TCONS_00065248 lncRNA downstream 122062 54747948 ~ 54754115 (-) False XLOC_033222
TCONS_00065249 lncRNA downstream 122304 54750932 ~ 54753873 (-) True XLOC_033222
TCONS_00065246 lncRNA downstream 353877 54503790 ~ 54522300 (-) False XLOC_033220
TCONS_00065252 lncRNA upstream 136187 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065253 lncRNA upstream 387357 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00064545 lncRNA upstream 928108 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00064762 lncRNA upstream 1122529 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00065254 lncRNA upstream 1175072 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00064532 mRNA downstream 30555 54838269 ~ 54845622 (-) False XLOC_033226
TCONS_00064533 mRNA downstream 31094 54838511 ~ 54845083 (-) False XLOC_033226
TCONS_00064529 mRNA downstream 50116 54806936 ~ 54826061 (-) False XLOC_033224
TCONS_00064530 mRNA downstream 59610 54807325 ~ 54816567 (-) False XLOC_033224
TCONS_00064528 mRNA downstream 60291 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064534 mRNA upstream 334841 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064535 mRNA upstream 401174 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064536 mRNA upstream 412862 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064537 mRNA upstream 441260 55327909 ~ 55347616 (-) False XLOC_033233
TCONS_00064538 mRNA upstream 445811 55332460 ~ 55354004 (-) True XLOC_033233
TCONS_00064531 other downstream 61140 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 368999 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 369591 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1596247 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1843066 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064542 other upstream 660486 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 668613 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 763470 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1652360 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 2376861 57263510 ~ 57263645 (-) True XLOC_033251