RNA id: TCONS_00064548


Basic Information

Item Value
RNA id TCONS_00064548
length 625
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_033241
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55909795 ~ 55997350 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTACGTGTGTTTTTTTGGAAACCGCAGGTGCTTTGTCATTGAGAAATACTGCGCGTTCACCTTTTGGTTCCCCCTGTGCAGGGCACGATTAGACATGAATTGTgctctgtgtgtttttgttcatattttaccttCGAGATGTACTGTTGGAGCGAAGCCTGGTGTGCTTTTAGGTCACGTATTTCTaacacgcacaaaaaaatgttctgtaatTTTTCAGGAGAGCTGACAGCTGAACGTGCGCAAGAGGAAGTACATAACAGACAGTGACAGGAGCCACTAGACGCACACTTCAGGAAACACACATTTAGGCTACTCCAGCTGTGCTCATGGCAGCTTACGGACAGACGCAGTACAGCCCGGCGTTACAGCCAGCGGGTCCTTACACACcatacacacatcacacacaggGATACAGCATGACGTCCTACAATATTAAAACAGAAGATGGTTTGAGCCATTCACCTGGTCAGAGCAGTTTACTGGGATACACACCAAACTTCAGCGGGACGCCCCCCGGACAGACGCTCTACAGCTACTCACACGGCGGCAGCATTTCTTCTGGAATTTTCCAGGGTGCGAACAGCATCACGGGCTCAACGCCGTTCAGTCCAGCGCAGCAG

Function

GO:

id name namespace
GO:0045739 positive regulation of DNA repair biological_process
GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048839 inner ear development biological_process
GO:0048856 anatomical structure development biological_process
GO:0016576 histone dephosphorylation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-040912-24 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within inner ear development. Predicted to be active in nucleus. Is expressed in several structures, including head mesenchyme; neural plate; otic vesicle; presumptive telencephalon; and sensory system. Orthologous to human EYA2 (EYA transcriptional coactivator and phosphatase 2).

Ensembl:

ensembl_id ENSDART00000155963

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064545 lncRNA downstream 118644 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00065253 lncRNA downstream 667998 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00065252 lncRNA downstream 917248 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065251 lncRNA downstream 1059450 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065250 lncRNA downstream 1059512 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00064762 lncRNA upstream 50473 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00065254 lncRNA upstream 103016 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00065255 lncRNA upstream 371566 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00065256 lncRNA upstream 428749 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00064763 lncRNA upstream 549906 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00064546 mRNA downstream 81474 55852274 ~ 55864687 (-) True XLOC_033240
TCONS_00064541 mRNA downstream 360738 55449300 ~ 55585423 (-) True XLOC_033235
TCONS_00064540 mRNA downstream 522941 55396808 ~ 55423220 (-) True XLOC_033234
TCONS_00064539 mRNA downstream 546947 55396807 ~ 55399214 (-) False XLOC_033234
TCONS_00064538 mRNA downstream 592157 55332460 ~ 55354004 (-) True XLOC_033233
TCONS_00064549 mRNA upstream 139266 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA upstream 142051 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064552 mRNA upstream 679983 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064554 mRNA upstream 1442473 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064555 mRNA upstream 1443668 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064544 other downstream 295910 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 390765 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 398891 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064531 other downstream 1131124 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 1438983 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064551 other upstream 580304 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 1304805 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064559 other upstream 1555129 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 1810837 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 3177966 59136671 ~ 59136787 (-) True XLOC_033272