RNA id: TCONS_00064762


Basic Information

Item Value
RNA id TCONS_00064762
length 697
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_033242
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 56009178 ~ 56038817 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGTTTTAACTTTTAAGTTTGCATTTATTAACTGTATTAATTTCAATAATACAATTGCATAttcattatttatgtaatttccCTTTGCGGTGAACGTGGTGTGATTTTATCAGATCCATCCTCAAAGTGTTTGTGTGCTCTGTTTTGGTAAGAGGTGCAGGAATTCTGTTGCCGTAACCTCAGTGCTGTAACCTCAAGCAAACCTgttgttatataaatatacattatgtACCCTGTGCCTCTAGTTACCTCGAGGCCGTGAAATGGGTGTTAACCAGCAACACCGTCTCTTCCTAAGGAAGTGTTTACAAATCTGTTCCCTACTTAAAACCTTTAAAACAAGCCTTGAGAGCAAACAGAGCTGCAAGCTTTGGAGGTGAACACAGATCTTGAGTATCACTGTTTTCATCCCCAGAGAAACAACATTTATCATAAGCAGAGCAAAACAAGGTGGATCCATTACACCATCATCACTTTCATCCTGAAGAACGGCAATTTCACATCGGTCGACAAGATGAGACTGAATAGGGATTCATGGGATAATAATGCTGCTTGTATCAAATACCTTCCTGCAAGGCACTCTTGAATCGGTGCATATTTGACTGAACATACTTGGAAAcgtttcttcaattgttttaAGGCTGCGTACCGGAACAAAGACTGGTACACACCTGTCACTCACACTCCTGAGAAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064545 lncRNA downstream 181661 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00065253 lncRNA downstream 731015 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00065252 lncRNA downstream 980265 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065251 lncRNA downstream 1122467 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065250 lncRNA downstream 1122529 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00065254 lncRNA upstream 22904 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00065255 lncRNA upstream 291454 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00065256 lncRNA upstream 348637 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00064763 lncRNA upstream 469794 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00064764 lncRNA upstream 469794 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00064547 mRNA downstream 11828 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064548 mRNA downstream 50473 55946161 ~ 55958705 (-) True XLOC_033241
TCONS_00064546 mRNA downstream 144491 55852274 ~ 55864687 (-) True XLOC_033240
TCONS_00064541 mRNA downstream 423755 55449300 ~ 55585423 (-) True XLOC_033235
TCONS_00064540 mRNA downstream 585958 55396808 ~ 55423220 (-) True XLOC_033234
TCONS_00064549 mRNA upstream 59154 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA upstream 61939 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064552 mRNA upstream 599871 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064554 mRNA upstream 1362361 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064555 mRNA upstream 1363556 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064544 other downstream 358927 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 453782 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 461908 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064531 other downstream 1194141 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 1502000 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064551 other upstream 500192 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 1224693 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064559 other upstream 1475017 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 1730725 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 3097854 59136671 ~ 59136787 (-) True XLOC_033272

Expression Profile

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