RNA id: TCONS_00065254


Basic Information

Item Value
RNA id TCONS_00065254
length 300
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_033243
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 56061721 ~ 56073926 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATGGAGTGGACGACCAGACTGTCAGTGTTGCTGCTGGTTAAACAGCGTTTTCATGACATTTCTGATGCTGTGGACAATGAATATGAATCGAAATTGTCAGTGACAGGCCACTTAGTCTAATTGTGTGGATGAGAGCTGAAGGTTGTCTTAGGAGAGGAGAAGAAGGCAAGGAGTTAAACAGCAGAGAAGAGGAGGAGCCAGAAAGAAAGAGAAGACAAGAAAAGAGCTCTGGCTTTGACAAATGATCTAATAAAGGACAGGAGGATTATGGGCCCGGCGCCCACTGGGAAGAGGAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064762 lncRNA downstream 22904 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00064545 lncRNA downstream 234204 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00065253 lncRNA downstream 783558 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00065252 lncRNA downstream 1032808 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065251 lncRNA downstream 1175010 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065255 lncRNA upstream 256345 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00065256 lncRNA upstream 313528 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00064763 lncRNA upstream 434685 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00064764 lncRNA upstream 434685 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00065257 lncRNA upstream 881014 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064547 mRNA downstream 64371 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064548 mRNA downstream 103016 55946161 ~ 55958705 (-) True XLOC_033241
TCONS_00064546 mRNA downstream 197034 55852274 ~ 55864687 (-) True XLOC_033240
TCONS_00064541 mRNA downstream 476298 55449300 ~ 55585423 (-) True XLOC_033235
TCONS_00064540 mRNA downstream 638501 55396808 ~ 55423220 (-) True XLOC_033234
TCONS_00064549 mRNA upstream 24045 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA upstream 26830 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064552 mRNA upstream 564762 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064554 mRNA upstream 1327252 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064555 mRNA upstream 1328447 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064544 other downstream 411470 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 506325 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 514451 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064531 other downstream 1246684 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 1554543 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064551 other upstream 465083 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 1189584 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064559 other upstream 1439908 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 1695616 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 3062745 59136671 ~ 59136787 (-) True XLOC_033272

Expression Profile

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