RNA id: TCONS_00065255


Basic Information

Item Value
RNA id TCONS_00065255
length 1655
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_033245
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 56330271 ~ 56618557 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAAGGGCTGAATTTGTATTACTAGTGACATTTTCATCAATAGAAATGCATCTTCTGAAGGGTAATTTTGTAGCAACGTAAGTTAGCTTCATTGCTAACAAACTTGAACTACAATACATACAACTCCATTCTGGATTGCATTGAATCCTGAAAGTCAACACACTAGAGACGTAGAGctcatttttttcttcttgctgGCTGACCATGGCAGATAAGAGTCAGGACCCATCAGAGCCACTGGAGCGGCCGCCCGGCCGAGTGCCTGACCTAAATGCTTGAGTGCGCTTTAGCTGGCAGAGCCGGTCCGGCGGGCAGCAGAGGTGGACGAGGCTCTTCTACCTGCGTACTGAGAGTGTCTAAATTGCTTGCTTGTGAAGCGGTCAGACTGTCACTGATTCTCAGAGGACAGTGTTCTGGGATGGGAAACGCATGGAGAGAAAACTGCAGACGATAATGGTTTGACCGACCCGGATTACGGTGCGCTGGAAATATTGAGCCTCCCAGACCTACATCGTCGACCGCAAGTGTTCATTTTTCCACCAAACTACGCTAAAGTTGATTTATACACCCTGGGATAATTGGAAGCTCGAGTCAGCAAGGTCTTATGAGGTTATAAAGCCGCTCCATCATCAGTGTCCCTCTAATGGCTTTCAAATGTCCCGGCTGCTCCGACTCCAATTTTCACATCAATTTATTGCATGTAAACAAGCTGTCGAGTCAATGAACTGTGAAACTCCACCGTAAAAGAGCCGCTTTTACATCAGAGCGTGTGGAAATAGAAAGCGGCTCATGTAAATGCAGATGTGGGTTAGCCAGATACATGCTCATTTGCTTCGGCCACATGTGTTACTGTGAGTGCGGGACGGGGTGCGAGACCTCAGGAGACGCTAACAAGTTAATTTGTATGTTCCTCAAGTTTCCGCAAGAGATACGACTGGAGTCCCTCACCACATCTGACGGCTTGTAGGAAAGCTAAATTATGTGTCATTTGACGCAGAATATTCCCACGTCTTCTCGCTTCAGGAACTGGCCTTCGCATGAtgccgaaataaaagaaacatgAGGTCGAATTTAGAAtctttgatcatattttattttaacgtagaattcacactattaacaaattattaactAGCTCAATaaaatgtcataagacgttaatattaggttagatttaggttgtgatgttagATGGCTAAAACTTAATGTCTAGCCTAtatgtctaaggacaacgttattttgacttCCAATAACGGTCAAATGGCgttgattttagtttgtgttggaaagtgaccaaaatccaacgtcttaaaccaacgtcacgTTGACATCAAttgctgacatttattcatcaggtatgacaaccaaaacccaacatctgatagacatcataggggtaacgtccacacaacttcaagctgtacAATCTTTAGACATTGTTATTTGgctgtttttaggttgtgttggaaaatgaccaCATTATAACATCTGTCTGACGTTGGACACTGATGTCAGTCTGACATTGGGTTTATATGTAAATGTGTACCCATGCCATTTTATTAAGATATGCATGTTGTGCTTTTATTGTGCGACCAAATTGTATCgaacgtttaaaaaaaaatttaattactattagacttttgtaataaatgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065254 lncRNA downstream 256345 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00064762 lncRNA downstream 291454 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00064545 lncRNA downstream 502754 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00065253 lncRNA downstream 1052108 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00065252 lncRNA downstream 1301358 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065257 lncRNA upstream 387028 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064765 lncRNA upstream 540413 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065258 lncRNA upstream 1052993 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064560 lncRNA upstream 1062502 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 1129223 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00064549 mRNA downstream 218442 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA downstream 226553 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064547 mRNA downstream 332921 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064548 mRNA downstream 371566 55946161 ~ 55958705 (-) True XLOC_033241
TCONS_00064546 mRNA downstream 465584 55852274 ~ 55864687 (-) True XLOC_033240
TCONS_00064552 mRNA upstream 70776 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064554 mRNA upstream 833266 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064555 mRNA upstream 834461 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064556 mRNA upstream 868402 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064557 mRNA upstream 910425 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064544 other downstream 680020 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 774875 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 783001 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064531 other downstream 1515234 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 1823093 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064553 other upstream 695598 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064559 other upstream 945922 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 1201630 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 2568759 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 3117233 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

//