RNA id: TCONS_00065257


Basic Information

Item Value
RNA id TCONS_00065257
length 807
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_033249
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 56954940 ~ 57108188 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGTCGCCGCATGAGGCTGCGCGCTGCTGTCAGACGCGCGCTGGAGACACGAGCGGATCACGCGCGGCGGAGGAGCGGAGCGCAGCATCGCATCGCATCGCATGGCATCGCGTCTGTCCACAGCTCACACCGCGCCGCATTGAGGATCCTACCCTTTTAGAGGAGCAGCACGAATTACGCGGAACACAGTGCGTAAAACCCACAGCCGAGGCTTCATTGTGACTGCGCTTCAGAGCATTCAGGTTCGAGTTTGGTGAAGCATGCTTCCACAAATAAGATAAAGGAGATGTAAAATCAAGGTACAAATATGTGGTTTGAGTGTAGTTTTCTCTTatgtttgctttaaaaaaagactaCTATTTGTGTTAAAGAAGGGTTTAGCTAAGTGGTTTGTAAGCTGATCTATACGACAAGCTCTGCCTTCTTGTGGACGTCTGCAAGAAGGACATGTATCTGAAACGCACAAGACAATGTACCAAAGTAACATATTCaggattcgcaaaaatgtagacagcgccctctagctAATTTCTCAAATGAAACATGCAGAGAAACTTACCCAGAGCAATGAATTTTACGCTTCACAAAAATGTTTGGTTGCTCACTTTGTACAGTGTTGTGCTTGTGCTGCATGTTCGAGTTCGGTGCAGCACGCTTCTACAAAAGTGATAAAAGCACTGTACAATTAAGGTAAAACTACATGATATCAGTGCACTTTTCTTTTacgtttgcttttaaaaacactattatttGTGTTTAGAGAAGAGTTTAGCTCAGTGGTTTGCTAGCTGATCTGTACAACAAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064764 lncRNA downstream 336383 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00065255 lncRNA downstream 387028 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00064763 lncRNA downstream 412174 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00065256 lncRNA downstream 565480 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00065254 lncRNA downstream 881014 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00064765 lncRNA upstream 137 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065258 lncRNA upstream 512717 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064560 lncRNA upstream 522226 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 588947 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00065260 lncRNA upstream 679532 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00064552 mRNA downstream 77574 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064549 mRNA downstream 843111 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA downstream 851222 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064547 mRNA downstream 957590 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064548 mRNA downstream 996235 55946161 ~ 55958705 (-) True XLOC_033241
TCONS_00064554 mRNA upstream 292990 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064555 mRNA upstream 294185 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064556 mRNA upstream 328126 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064557 mRNA upstream 370149 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064558 mRNA upstream 383606 57491794 ~ 57539141 (-) False XLOC_033255
TCONS_00064551 other downstream 415815 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 1304689 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 1399544 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 1407670 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064531 other downstream 2139903 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064553 other upstream 155322 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064559 other upstream 405646 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 661354 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 2028483 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 2576957 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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