RNA id: TCONS_00064765


Basic Information

Item Value
RNA id TCONS_00064765
length 469
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_033250
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57108325 ~ 57122910 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAAGTTCAACAGTCCAAAATCTGAGCCATACAGGTAAAAGTTTGCGTCAAGGATGAACAGAATCAGCGGAAACGGAAAGAGAAAGCGATCTGTTATGATTTCAGATACGTGACGCTTCTGTCAGTTCATATTTGCGCTTTATTTTGCTAATGTTTGAGTTTCCCTTGAGGCTGACTGCAATGCAAGGTTTGCTGAATTTCAAACACCACTTACTTTGAGAGATTACGGACTCCACGGTTTGAACAACAATATACACATGTAATATCCAGAAGCTCTTTCTGTAGTCAGCGTTTCCCCAAGACAAGATATTTAAGGCTTCAGAGAAGAGCGAGGGATGAAATATGACAAGCAAATTCATGCCAGACAATGATGGATGAACGGCATCAGCAAGTGAAGGAAGACTTGCTGTACAAAAACATGTATTTGCAGTGTAAACACCTTGACGTGAAAGAAAAATATGAATGCGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065257 lncRNA downstream 137 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064764 lncRNA downstream 489768 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00065255 lncRNA downstream 540413 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00064763 lncRNA downstream 565559 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00065256 lncRNA downstream 718865 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00065258 lncRNA upstream 497995 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064560 lncRNA upstream 507504 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 574225 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00065260 lncRNA upstream 664810 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065261 lncRNA upstream 958725 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00064552 mRNA downstream 230959 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064549 mRNA downstream 996496 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA downstream 1004607 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064547 mRNA downstream 1110975 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064554 mRNA upstream 278268 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064555 mRNA upstream 279463 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064556 mRNA upstream 313404 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064557 mRNA upstream 355427 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064558 mRNA upstream 368884 57491794 ~ 57539141 (-) False XLOC_033255
TCONS_00064551 other downstream 569200 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 1458074 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 1552929 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 1561055 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064531 other downstream 2293288 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064553 other upstream 140600 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064559 other upstream 390924 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 646632 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 2013761 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 2562235 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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